Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 0.0e+00 2386.3 1298 100.0
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 2.4e-206 723.8 1412 39.7
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 9.0e-206 721.8 1361 40.3
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 5.5e-187 659.4 1365 40.5
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 4.8e-175 619.8 1350 36.9
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.3e-175 619.4 1348 36.9
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 9.1e-174 615.5 1349 36.8
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 1.9e-171 607.8 1397 36.3
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.8e-169 601.3 1354 38.0
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 3.4e-168 597.0 1356 36.7
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 1.3e-164 585.1 1003 40.6
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 2.4e-158 564.3 1362 35.5
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.2e-149 535.4 1386 33.1
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.8e-146 524.2 1388 34.1
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 9.9e-136 489.2 1381 32.6
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.1e-134 485.7 1362 33.6
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 9.2e-134 482.6 1383 33.7
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 1.6e-133 481.9 1362 33.3
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 3.3e-131 474.2 1004 37.3
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 3.3e-131 474.2 1276 35.0
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 1.2e-128 465.7 1318 31.6
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 4.4e-128 463.8 870 39.4
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.3e-123 447.2 1256 32.3
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 6.0e-117 426.8 1013 34.1
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.9e-115 421.8 1375 33.4
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.9e-110 405.2 989 35.1
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 4.2e-110 404.1 1330 30.4
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 2.7e-109 401.4 1010 34.4
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 5.3e-105 387.1 958 35.2
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 1.6e-98 365.5 1052 32.9
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 8.2e-98 363.2 1373 31.0
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.0e-84 319.7 1351 30.9
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.0e-84 319.7 966 32.1
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.7e-82 312.4 1325 27.5
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 8.2e-82 310.1 1367 28.5
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 8.5e-79 300.1 1314 27.3
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.7e-74 285.8 1361 27.5
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.7e-74 284.6 1210 28.1
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 2.4e-73 282.0 1339 27.3
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 4.1e-73 281.2 1352 27.6
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 5.3e-73 280.8 1098 29.4
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 4.0e-68 264.6 1184 28.1
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 2.6e-67 261.9 1312 29.2
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 2.8e-66 258.5 1428 26.3
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 4.8e-66 257.7 1345 26.8
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 4.1e-65 254.6 1354 27.0
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 3.8e-63 248.1 1420 30.0
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 7.2e-62 243.8 1356 27.8
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 6.8e-60 237.3 1281 29.8
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.0e-59 235.7 1291 29.5
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 9.8e-59 233.4 1431 27.7
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.4e-57 228.8 1268 28.4
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 9.1e-57 226.9 1311 25.3
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 4.5e-56 224.6 1293 29.2
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 1.6e-53 216.1 1431 24.9
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 2.1e-53 215.7 1031 27.4
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.0e-52 213.4 1418 25.2
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 6.8e-52 210.7 1265 26.5
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 3.1e-49 201.8 1321 25.1
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.3e-47 196.4 1289 28.2
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.8e-47 194.9 1335 26.0
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 6.6e-47 194.1 1262 29.1
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 9.5e-46 190.3 1332 24.0
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 3.4e-43 181.8 1313 24.1
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 4.4e-43 181.4 1473 22.2
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 7.5e-43 180.6 1327 23.8
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.3e-42 179.9 1326 23.5
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 3.7e-42 178.3 1274 26.9
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 5.0e-39 167.9 1255 26.0
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 1.6e-37 162.9 736 28.0
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 2.0e-35 156.0 1321 23.8
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 4.9e-34 151.4 1180 26.4
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 5.4e-33 147.9 203 45.8
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 6.0e-32 144.4 1328 25.0
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 5.0e-31 141.4 1306 23.9
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 1.5e-30 139.8 777 24.2
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 4.3e-30 138.3 1309 23.8
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 7.3e-30 137.5 1347 25.6
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 4.7e-29 134.8 1164 22.6
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 8.1e-29 134.0 981 24.2
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 6.8e-28 131.0 185 45.4
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 1.5e-27 129.8 1375 23.3
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 4.4e-27 128.3 1330 23.7
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 1.3e-26 126.7 1285 23.1
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 3.9e-23 115.2 741 26.2
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.9e-23 115.2 236 38.6
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 2.1e-21 109.4 185 41.1
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 8.9e-20 104.0 209 37.3
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 7.6e-19 100.9 188 36.7
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 3.7e-18 98.6 303 30.0
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.1e-17 97.1 181 37.0
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.2e-16 93.6 128 41.4
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.5e-16 92.0 1185 23.1
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 3.9e-15 88.6 204 32.8
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 1.8e-12 79.7 171 35.1
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 8.9e-12 77.4 55 67.3
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 2.2e-10 72.8 78 46.2
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 4.9e-10 71.6 63 52.4
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 8.4e-10 70.9 170 34.1
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 2.4e-09 69.3 63 50.8
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.6e-08 66.6 83 47.0
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.6e-08 66.6 72 48.6
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.1e-08 66.2 101 43.6
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 2.1e-08 66.2 109 37.6
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 3.5e-08 65.5 317 27.8
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 7.8e-08 64.3 63 50.8
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 7.8e-08 64.3 63 50.8
A09p51320 Brassica napus HOM05D014107 ORTHO05D003056 1.0e-07 63.9 57 52.6
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 3.0e-07 62.4 163 30.7
BraA09t40573Z Brassica rapa HOM05D014107 ORTHO05D003056 3.9e-07 62.0 56 51.8
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.5e-06 60.1 81 40.7
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 1.5e-06 60.1 173 30.6
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.9e-06 59.7 55 41.8
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 3.3e-06 58.9 104 38.5
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 5.6e-06 58.2 192 29.7
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 7.3e-06 57.8 655 22.9
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 9.6e-06 57.4 463 24.2
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 9.6e-06 57.4 131 31.3


User provided reference genes

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