Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1923 Cannabis sativa HOM05D003380 ORTHO05D018146 5.8e-36 153.7 77 100.0
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 6.0e-33 143.7 77 92.2
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 4.3e-31 137.5 75 89.3
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 5.6e-31 137.1 75 89.3
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 1.6e-30 135.6 75 89.3
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 2.1e-30 135.2 75 89.3
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 2.1e-30 135.2 75 86.7
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 2.1e-30 135.2 74 87.8
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 2.1e-30 135.2 75 88.0
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 2.1e-30 135.2 75 86.7
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 2.8e-30 134.8 75 88.0
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 2.8e-30 134.8 74 87.8
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 2.8e-30 134.8 75 89.3
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 3.7e-30 134.4 75 88.0
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 3.7e-30 134.4 75 88.0
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 3.7e-30 134.4 75 88.0
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 3.7e-30 134.4 77 85.7
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 3.7e-30 134.4 75 88.0
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 3.7e-30 134.4 75 88.0
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 4.8e-30 134.0 77 85.7
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 1.4e-29 132.5 75 88.0
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 1.4e-29 132.5 75 88.0
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 1.4e-29 132.5 75 88.0
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 1.4e-29 132.5 75 86.7
DCAR_000674 Daucus carota HOM05D003380 ORTHO05D004232 1.8e-29 132.1 75 86.7
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 2.4e-29 131.7 74 89.2
QL01p024860 Quercus lobata HOM05D003380 ORTHO05D018146 2.4e-29 131.7 75 86.7
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 2.4e-29 131.7 75 85.3
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 2.4e-29 131.7 75 85.3
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 3.1e-29 131.3 73 89.0
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 85.3
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 3.1e-29 131.3 75 86.7
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 4.0e-29 131.0 75 86.7
TAR636G3035 Trochodendron aralioides HOM05D003380 ORTHO05D004232 4.0e-29 131.0 74 87.8
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 5.3e-29 130.6 75 85.3
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 5.3e-29 130.6 75 85.3
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 6.9e-29 130.2 75 85.3
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 9.0e-29 129.8 75 84.0
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 9.0e-29 129.8 75 85.3
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 1.2e-28 129.4 75 84.0
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 1.2e-28 129.4 75 84.0
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 1.2e-28 129.4 73 87.7
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 1.5e-28 129.0 75 82.7
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.5e-28 129.0 74 86.5
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 2.0e-28 128.6 75 84.0
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 2.0e-28 128.6 75 84.0
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 2.0e-28 128.6 75 84.0
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 2.0e-28 128.6 73 87.7
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 2.6e-28 128.3 74 86.5
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 2.6e-28 128.3 73 86.3
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 3.4e-28 127.9 75 85.3
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 3.4e-28 127.9 74 87.8
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 3.4e-28 127.9 74 86.5
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 3.4e-28 127.9 75 81.3
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 4.5e-28 127.5 75 82.7
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 4.5e-28 127.5 75 82.7
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 4.5e-28 127.5 73 86.3
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 5.8e-28 127.1 75 82.7
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 5.8e-28 127.1 75 85.3
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 5.8e-28 127.1 73 84.9
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 7.6e-28 126.7 75 82.7
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 7.6e-28 126.7 75 86.7
GSVIVG01035567001 Vitis vinifera HOM05D003380 ORTHO05D004232 7.6e-28 126.7 75 80.0
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 1.0e-27 126.3 75 85.3
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 1.0e-27 126.3 75 85.3
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 1.0e-27 126.3 75 84.0
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 1.3e-27 125.9 73 83.6
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 1.3e-27 125.9 75 84.0
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.7e-27 125.6 74 85.1
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 2.9e-27 124.8 84 78.6
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 2.9e-27 124.8 73 84.9
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 3.8e-27 124.4 74 82.4
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 3.8e-27 124.4 73 83.6
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 3.8e-27 124.4 75 85.3
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 3.8e-27 124.4 75 85.3
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 4.9e-27 124.0 75 85.3
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 4.9e-27 124.0 75 85.3
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 4.9e-27 124.0 75 85.3
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 4.9e-27 124.0 75 85.3
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 4.9e-27 124.0 75 81.3
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 4.9e-27 124.0 73 83.6
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 4.9e-27 124.0 75 80.0
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 8.4e-27 123.2 73 82.2
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 8.4e-27 123.2 74 85.1
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 1.1e-26 122.9 76 82.9
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 1.4e-26 122.5 73 79.5
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 1.4e-26 122.5 73 83.6
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 1.9e-26 122.1 75 84.0
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 1.9e-26 122.1 69 88.4
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 2.5e-26 121.7 74 85.1
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 2.5e-26 121.7 72 84.7
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 2.5e-26 121.7 73 84.9
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 2.5e-26 121.7 73 84.9
Lj6C279G2 Lonicera japonica HOM05D003380 ORTHO05D004232 4.2e-26 120.9 73 82.2
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 5.5e-26 120.6 73 79.5
MELO3C000704.2 Cucumis melo HOM05D003380 ORTHO05D018146 7.1e-26 120.2 69 84.1
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 9.3e-26 119.8 78 80.8
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 9.3e-26 119.8 78 80.8
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 9.3e-26 119.8 73 80.8
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 9.3e-26 119.8 73 80.8
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 9.3e-26 119.8 73 82.2
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 1.2e-25 119.4 73 79.5
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 1.2e-25 119.4 73 80.8
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 1.2e-25 119.4 73 79.5
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 1.2e-25 119.4 75 77.3
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 2.7e-25 118.2 75 81.3
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 2.7e-25 118.2 75 80.0
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 3.5e-25 117.9 75 81.3
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 3.5e-25 117.9 72 81.9
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 3.5e-25 117.9 73 79.5
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 3.5e-25 117.9 73 79.5
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 3.5e-25 117.9 73 79.5
Zm00001eb270240 Zea mays HOM05D003380 ORTHO05D004232 3.5e-25 117.9 73 76.7
Zm00001eb377530 Zea mays HOM05D003380 ORTHO05D004232 3.5e-25 117.9 73 76.7
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 4.6e-25 117.5 73 79.5
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 4.6e-25 117.5 73 79.5
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 7.9e-25 116.7 75 80.0
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 7.9e-25 116.7 75 80.0
Os06g0139900 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 1.3e-24 115.9 73 75.3
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 1.8e-24 115.5 76 78.9
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 2.3e-24 115.2 73 76.7
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 2.3e-24 115.2 73 78.1
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 2.3e-24 115.2 73 78.1
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 3.0e-24 114.8 73 76.7
Atru.chr7.2688 Acer truncatum HOM05D003380 ORTHO05D018146 5.1e-24 114.0 68 80.9
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 5.1e-24 114.0 73 75.3
Os02g0770000 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 6.7e-24 113.6 73 75.3
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 8.7e-24 113.2 75 76.0
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 1.1e-23 112.8 65 84.6
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.5e-23 112.5 73 75.3
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 5.7e-23 110.5 65 84.6
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 1.3e-22 109.4 73 74.0
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.6e-22 109.0 65 83.1
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.6e-22 109.0 65 83.1
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 2.8e-22 108.2 67 79.1
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 2.4e-21 105.1 74 74.3
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 1.2e-20 102.8 75 73.3
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 1.2e-20 102.8 70 72.9
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 1.5e-20 102.4 73 72.6
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 4.5e-20 100.9 70 71.4
SEGI_32352 Sequoiadendron giganteum HOM05D003380 ORTHO05D018146 7.6e-20 100.1 69 73.9
Lj6A275T62 Lonicera japonica HOM05D003380 ORTHO05D004232 1.0e-19 99.8 59 84.7
Mapoly0016s0041 Marchantia polymorpha HOM05D003380 ORTHO05D004232 1.0e-16 89.7 55 78.2
ATR0796G318 Amborella trichopoda HOM05D003380 ORTHO05D018146 3.0e-16 88.2 67 67.2
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 1.5e-15 85.9 55 78.2
A05p03280 Brassica napus HOM05D003380 ORTHO05D018146 3.3e-15 84.7 63 71.4
AagrBONN_evm.TU.Sc2ySwM_228.613 Anthoceros agrestis HOM05D003380 ORTHO05D004232 9.7e-15 83.2 64 59.4
BraA05t19317Z Brassica rapa HOM05D003380 ORTHO05D018146 1.3e-14 82.8 57 77.2
SMO117G0031 Selaginella moellendorffii HOM05D003380 ORTHO05D004232 1.4e-13 79.3 76 53.9
Atru.chr1.909 Acer truncatum HOM05D003380 ORTHO05D004232 1.3e-11 72.8 64 62.5
CBR_g55787 Chara braunii HOM05D003380 ORTHO05D004232 5.0e-11 70.9 71 52.1
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.0e-08 63.2 37 89.2
Sopen05g027780 Solanum pennellii HOM05D003380 ORTHO05D004232 6.7e-08 60.5 42 73.8
Hma1.2p1_0263F.1_g105450 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 9.7e-07 56.6 37 81.1
Actinidia31878 Actinidia chinensis HOM05D003380 ORTHO05D004232 1.3e-06 56.2 34 85.3
Medtr3g108450 Medicago truncatula HOM05D003380 ORTHO05D004232 3.7e-06 54.7 71 52.1


User provided reference genes

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