Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 6.2e-272 940.3 501 100.0
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 5.2e-226 787.7 501 82.8
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.3e-224 783.1 496 82.3
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.8e-224 781.9 492 82.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 6.5e-221 770.8 502 81.7
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 8.6e-221 770.4 501 80.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.2e-217 760.0 500 81.8
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.5e-217 759.6 501 80.4
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.4e-217 758.4 521 77.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.3e-216 756.5 501 79.8
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.4e-215 751.1 531 75.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 7.0e-215 750.7 502 80.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-213 746.5 510 77.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-212 743.4 503 77.9
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 6.8e-210 734.2 500 77.6
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.9e-208 728.8 501 76.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.7e-208 728.4 502 76.5
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 4.9e-208 728.0 498 79.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 6.4e-208 727.6 501 78.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 8.3e-208 727.2 502 77.7
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.4e-207 724.5 501 76.4
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.0e-207 724.2 498 79.3
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-206 723.4 504 78.4
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.0e-206 722.6 497 78.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.0e-206 722.6 501 76.2
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.5e-206 721.8 501 78.2
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 3.0e-205 718.8 505 77.8
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 5.0e-205 718.0 468 81.6
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 8.6e-205 717.2 501 77.8
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.6e-205 717.2 504 77.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.1e-204 716.8 504 77.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-204 716.5 499 76.6
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 7.3e-204 714.1 504 76.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 9.5e-204 713.8 498 78.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.2e-203 713.4 502 78.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.1e-203 712.6 502 76.5
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 4.7e-203 711.4 500 75.2
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.4e-202 709.9 502 76.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 8.9e-202 707.2 494 77.9
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.6e-201 705.7 499 76.0
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.4e-201 705.3 494 77.3
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 5.8e-201 704.5 501 74.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 7.5e-201 704.1 501 75.6
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.7e-200 703.0 497 77.7
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.9e-200 702.2 499 77.6
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 3.7e-200 701.8 501 75.6
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 8.3e-200 700.7 501 75.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.1e-199 700.3 504 76.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.2e-199 698.7 500 76.2
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.4e-199 698.0 504 76.2
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.6e-198 696.4 495 74.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.1e-198 696.0 493 76.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 3.5e-198 695.3 500 75.8
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 7.8e-198 694.1 491 76.6
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 8.6e-197 690.6 502 73.1
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.1e-195 686.0 501 76.0
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 4.0e-194 681.8 512 73.6
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 2.6e-193 679.1 525 72.2
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.4e-193 678.7 498 74.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.4e-193 678.3 501 73.7
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 7.5e-193 677.6 502 73.5
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.9e-192 675.6 500 72.8
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.4e-191 672.5 480 75.8
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.2e-191 672.2 487 75.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-190 670.2 523 70.9
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 2.3e-189 666.0 496 73.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.0e-189 665.6 497 73.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 8.6e-189 664.1 488 73.4
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.5e-188 662.5 471 77.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.1e-187 659.4 489 73.2
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.8e-186 656.4 493 72.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.8e-186 656.4 494 71.3
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.8e-186 656.4 508 71.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 3.1e-186 655.6 489 72.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.0e-186 655.2 504 71.0
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 8.9e-186 654.1 441 77.6
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.2e-185 653.7 501 70.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 2.0e-185 652.9 494 71.5
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.6e-185 652.5 503 71.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 9.9e-185 650.6 504 70.8
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.2e-184 649.4 504 70.4
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.9e-184 649.0 488 71.9
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 2.9e-184 649.0 498 73.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.4e-184 647.5 500 71.6
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.1e-183 647.1 513 69.0
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.8e-182 641.0 420 81.9
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 8.7e-181 637.5 492 71.3
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 7.3e-180 634.4 506 69.2
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.1e-179 632.9 508 69.5
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.2e-179 631.3 496 66.9
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.1e-178 629.0 482 71.2
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.9e-178 627.9 503 66.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 9.0e-178 627.5 504 68.3
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 9.0e-178 627.5 488 70.5
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 5.8e-177 624.8 486 70.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 5.8e-177 624.8 486 70.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.1e-174 616.3 501 66.1
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 5.1e-173 611.7 472 70.1
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 9.6e-172 607.4 507 67.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 4.8e-171 605.1 508 67.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.1e-170 604.0 509 67.2
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.0e-161 573.2 437 72.5
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.9e-157 558.9 380 78.9
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 7.4e-156 554.7 527 63.0
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.4e-154 550.4 492 63.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 9.3e-151 537.7 480 63.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.3e-151 537.7 355 80.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 9.7e-148 527.7 482 60.2
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.3e-141 506.5 498 58.0
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 3.9e-141 505.8 490 60.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.5e-137 492.3 486 59.7
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.5e-135 485.3 455 62.2
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.6e-129 466.5 403 62.8
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.2e-126 457.6 393 68.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 3.6e-126 456.1 375 70.1
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 8.0e-126 454.9 468 55.8
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.9e-119 433.7 490 55.9
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 5.2e-109 399.1 377 62.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 5.2e-109 399.1 377 62.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.0e-100 370.5 206 88.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 4.7e-94 349.4 425 51.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.0e-93 346.3 253 78.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 2.2e-91 340.5 369 53.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 9.2e-90 335.1 324 55.2
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.5e-87 325.1 219 79.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.7e-83 314.3 394 48.5
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.5e-79 300.4 221 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.9e-75 287.0 388 44.1
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.3e-61 239.6 202 67.8
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.4e-60 236.5 272 55.5
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.3e-59 235.0 369 42.5
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.9e-55 221.1 399 36.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-51 208.0 227 56.8
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 6.0e-49 199.5 132 75.8
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.3e-47 193.4 405 35.6
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 8.4e-43 179.1 290 43.1
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-41 174.5 96 86.5
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.3e-39 167.2 91 89.0
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.8e-38 163.3 106 70.8
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 5.1e-32 143.3 87 80.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 9.4e-26 122.5 140 54.3
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.3e-23 114.0 185 43.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.9e-20 103.2 96 53.1
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 7.7e-20 102.8 122 50.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 8.2e-14 82.8 70 64.3
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.0e-12 78.2 64 59.4
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.5e-10 72.0 62 59.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.5e-10 72.0 62 59.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.0e-08 65.9 65 61.5
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-08 65.5 62 54.8
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 2.3e-08 64.7 96 35.4
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 7.4e-07 59.7 51 68.6
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.2e-06 58.2 190 31.6
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 8.2e-06 56.2 38 78.9


User provided reference genes

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