Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 6.5e-131 470.7 233 100.0
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 8.6e-99 364.0 192 91.1
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.9e-98 362.8 192 90.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.9e-98 362.8 192 90.6
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.5e-98 362.5 192 90.6
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.3e-98 361.7 192 89.6
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.2e-97 360.1 209 82.8
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.6e-97 359.8 192 89.6
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 2.1e-97 359.4 192 89.6
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.1e-97 359.4 192 89.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.1e-97 359.4 192 89.6
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.8e-97 359.0 192 89.6
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.8e-97 359.0 192 90.1
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.6e-97 358.6 209 82.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 4.7e-97 358.2 192 89.1
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 6.2e-97 357.8 192 88.5
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 8.0e-97 357.5 191 89.0
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 8.0e-97 357.5 192 90.1
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.8e-96 356.3 192 88.5
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 2.3e-96 355.9 191 90.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 3.1e-96 355.5 192 89.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.1e-96 355.5 192 88.5
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 4.0e-96 355.1 192 88.5
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 4.0e-96 355.1 192 88.5
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 4.0e-96 355.1 192 88.5
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 4.0e-96 355.1 192 89.1
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 6.8e-96 354.4 192 88.5
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 6.8e-96 354.4 192 89.1
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 6.8e-96 354.4 192 88.0
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.2e-95 353.6 192 89.6
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.2e-95 353.6 192 88.5
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.0e-95 352.8 192 88.0
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.0e-95 352.8 192 87.5
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.0e-95 352.8 192 86.5
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.0e-95 352.8 192 86.5
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-95 352.8 192 87.5
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.0e-95 352.8 192 88.5
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 2.6e-95 352.4 192 88.0
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 3.4e-95 352.1 192 87.0
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 5.8e-95 351.3 190 88.4
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 9.8e-95 350.5 192 87.0
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.3e-94 350.1 191 86.9
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.3e-94 350.1 192 85.9
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.3e-94 350.1 192 87.0
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.7e-94 349.7 192 84.9
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.7e-94 349.7 192 85.9
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.7e-94 349.7 192 85.9
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.7e-94 349.7 191 86.4
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.2e-94 349.4 192 88.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 2.9e-94 349.0 192 85.4
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 3.7e-94 348.6 192 87.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 4.9e-94 348.2 192 88.0
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 6.4e-94 347.8 191 86.9
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 6.4e-94 347.8 191 86.9
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.4e-94 347.8 192 84.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 8.3e-94 347.4 191 84.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.1e-93 347.1 192 87.0
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.4e-93 345.9 192 87.5
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 4.1e-93 345.1 192 85.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.4e-93 344.7 191 85.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.4e-93 344.7 191 85.9
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.4e-93 344.7 191 84.3
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 9.2e-93 344.0 192 85.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.2e-92 343.6 192 86.5
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 2.7e-92 342.4 190 85.3
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.5e-92 342.0 192 85.4
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.6e-92 341.7 192 84.4
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 6.0e-92 341.3 192 84.9
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 7.8e-92 340.9 192 84.4
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.3e-91 340.1 192 85.4
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 3.0e-91 339.0 192 85.4
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.0e-91 339.0 192 84.4
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 3.9e-91 338.6 191 83.8
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.9e-91 338.6 192 85.9
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 5.0e-91 338.2 192 85.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 5.0e-91 338.2 192 85.4
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.6e-91 337.8 192 84.9
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 6.6e-91 337.8 192 82.8
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.1e-90 337.0 192 84.4
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.5e-90 336.7 192 84.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.5e-90 336.7 192 83.3
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 3.3e-90 335.5 192 83.9
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 3.3e-90 335.5 192 83.9
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 3.3e-90 335.5 192 82.8
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.2e-89 333.6 191 84.3
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 2.1e-89 332.8 192 83.3
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 6.2e-89 331.3 192 81.8
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 6.2e-89 331.3 192 83.9
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 8.1e-89 330.9 192 81.8
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.4e-88 330.1 192 80.7
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 8.9e-88 327.4 192 80.2
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 8.9e-88 327.4 192 80.2
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.2e-87 327.0 192 79.7
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.5e-87 326.6 192 80.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.7e-86 323.2 192 80.7
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.7e-86 323.2 192 78.6
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.2e-86 322.8 192 79.2
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.9e-86 322.4 192 78.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 6.4e-86 321.2 192 77.6
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 9.2e-85 317.4 192 77.6
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 8.9e-80 300.8 191 73.3
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.5e-79 300.1 192 77.1
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 2.0e-79 299.7 191 72.8
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 9.2e-77 290.8 192 71.4
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 2.5e-74 282.7 191 68.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 6.2e-73 278.1 187 69.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 3.4e-71 272.3 156 85.9
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.3e-70 270.4 199 71.9
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 4.6e-68 261.9 154 83.8
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 4.0e-64 248.8 188 67.0
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 9.9e-63 244.2 192 62.0
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 8.4e-62 241.1 194 60.8
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 5.4e-61 238.4 193 61.1
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 7.1e-61 238.0 191 60.2
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.3e-57 227.3 154 73.4
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 3.7e-57 225.7 126 87.3
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.9e-56 221.5 255 51.4
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.5e-50 203.0 114 84.2
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.6e-49 200.3 173 59.5
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 4.0e-48 195.7 117 82.1
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.0e-38 164.5 138 63.8
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 4.6e-36 155.6 85 84.7
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.2e-25 120.2 67 82.1
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 2.2e-22 110.2 65 80.0
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.8e-19 100.5 208 33.2
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 8.2e-17 91.7 60 73.3
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 1.1e-16 91.3 104 54.8


User provided reference genes

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