Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 2.8e-76 288.5 141 100.0
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.4e-14 83.6 124 49.2
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.1e-13 80.5 109 47.7
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.6e-13 79.3 155 40.0
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 4.4e-13 78.6 134 41.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 9.7e-13 77.4 161 37.9
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 3.7e-12 75.5 136 39.0
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.8e-12 75.1 130 41.5
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.3e-12 74.7 145 40.0
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 8.2e-12 74.3 141 39.0
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.4e-11 73.6 130 40.8
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 3.1e-11 72.4 146 39.7
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 3.1e-11 72.4 129 44.2
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 3.1e-11 72.4 129 44.2
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 4.1e-11 72.0 129 39.5
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.2e-10 70.5 143 37.1
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.6e-10 70.1 132 42.4
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.6e-10 70.1 129 37.2
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.6e-10 70.1 131 38.9
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.6e-10 70.1 120 42.5
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.6e-10 70.1 155 36.1
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.0e-10 69.7 131 42.7
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 2.6e-10 69.3 137 39.4
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 2.6e-10 69.3 156 35.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 4.5e-10 68.6 136 35.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 5.9e-10 68.2 131 42.0
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.9e-10 68.2 136 39.0
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.0e-09 67.4 129 36.4
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.3e-09 67.0 129 40.3
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.7e-09 66.6 131 41.2
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.7e-09 66.6 139 35.3
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.7e-09 66.6 142 35.9
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.7e-09 66.6 136 38.2
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.2e-09 66.2 138 39.9
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 2.2e-09 66.2 110 40.9
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.9e-09 65.9 126 40.5
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.9e-09 65.9 126 38.1
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 3.8e-09 65.5 129 39.5
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.8e-09 65.5 129 39.5
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 3.8e-09 65.5 122 38.5
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.8e-09 65.5 94 46.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.8e-09 65.5 121 38.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 5.0e-09 65.1 129 38.8
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 5.0e-09 65.1 127 36.2
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 5.0e-09 65.1 111 42.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 6.5e-09 64.7 105 43.8
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.1e-08 63.9 143 35.0
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.5e-08 63.5 147 38.8
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.5e-08 63.5 123 37.4
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.5e-08 63.5 116 37.9
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.9e-08 63.2 128 41.4
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.5e-08 62.8 114 42.1
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.2e-08 62.4 135 35.6
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 3.2e-08 62.4 122 38.5
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 3.2e-08 62.4 93 43.0
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.2e-08 62.4 142 38.0
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.2e-08 62.0 127 35.4
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 5.5e-08 61.6 105 41.9
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 5.5e-08 61.6 126 38.1
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 9.4e-08 60.8 127 36.2
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 9.4e-08 60.8 107 43.0
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 9.4e-08 60.8 123 38.2
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.2e-07 60.5 144 35.4
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.2e-07 60.5 149 32.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.6e-07 60.1 120 35.0
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.6e-07 60.1 120 35.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 1.6e-07 60.1 131 32.8
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 2.1e-07 59.7 93 41.9
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.1e-07 59.7 130 33.8
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-07 59.7 122 36.9
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.7e-07 59.3 108 39.8
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 3.6e-07 58.9 135 34.1
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 3.6e-07 58.9 93 45.2
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.1e-07 58.2 122 36.1
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.1e-07 58.2 122 36.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 6.1e-07 58.2 106 38.7
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 8.0e-07 57.8 93 40.9
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.0e-07 57.8 118 39.8
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.4e-06 57.0 88 38.6
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.4e-06 57.0 110 40.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.8e-06 56.6 127 32.3
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.8e-06 56.6 118 39.8
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.3e-06 56.2 98 36.7
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.3e-06 56.2 98 36.7
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 2.3e-06 56.2 89 44.9
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.0e-06 55.8 122 35.2
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 3.0e-06 55.8 98 36.7
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 3.0e-06 55.8 124 35.5
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.0e-06 55.5 118 39.8
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.2e-06 55.1 111 37.8
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 6.7e-06 54.7 106 38.7


User provided reference genes

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