Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1508.0 805 100.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1258.4 804 83.1
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1253.0 786 83.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1248.8 804 82.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1244.2 804 82.5
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1241.9 814 81.4
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1241.5 804 80.3
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1236.5 804 82.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1236.5 809 81.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1234.9 805 78.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1234.9 804 80.7
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1233.8 806 80.3
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1231.5 805 79.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1228.4 810 79.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1221.5 809 78.9
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1218.8 820 78.8
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1216.4 805 80.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1215.3 804 80.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1213.7 805 79.8
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1213.4 807 78.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1212.6 804 79.5
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1208.0 797 79.2
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1208.0 798 80.5
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1207.6 879 75.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1204.9 798 80.1
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1204.1 809 77.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1202.6 813 79.0
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1202.2 808 79.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1195.6 812 78.8
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1192.9 805 77.8
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1188.7 762 81.5
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1186.4 813 77.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1181.8 850 73.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1181.0 803 78.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1179.1 804 77.1
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1177.2 812 77.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1176.8 809 76.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1176.4 805 76.3
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1176.0 850 73.9
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1174.5 808 76.1
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1174.5 806 75.8
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1173.3 817 76.0
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1172.1 808 75.9
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 810 75.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1167.5 797 75.9
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1162.1 805 75.2
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1161.4 803 75.2
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1160.6 804 76.1
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1159.4 810 75.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1159.1 804 76.1
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1150.6 808 75.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 804 75.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1149.8 810 74.7
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1147.9 793 75.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1146.3 793 75.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1142.5 793 75.2
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 805 74.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 832 72.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1131.7 798 74.1
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1129.4 904 67.6
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 803 73.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1126.7 673 85.9
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 805 73.4
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1124.4 798 73.8
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 801 72.8
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1117.8 794 74.3
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1116.7 805 72.3
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 812 72.7
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 793 73.6
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 793 73.6
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 793 74.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1110.5 793 74.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1110.5 793 74.1
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1110.5 811 72.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1109.0 811 71.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 802 71.9
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 815 70.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 802 72.2
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1105.1 813 72.3
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 815 71.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 821 71.6
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1096.6 815 70.4
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1095.5 771 75.1
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 807 70.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 800 71.5
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 798 70.6
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 647 85.0
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 811 70.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.7e-311 1072.4 809 72.4
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 6.6e-308 1060.4 647 83.9
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.3e-307 1058.1 808 69.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.4e-307 1057.0 647 83.6
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.6e-307 1056.6 793 70.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 9.0e-305 1050.0 818 68.5
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 4.0e-297 1024.6 795 70.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 9.0e-297 1023.5 793 69.6
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.2e-295 1018.8 802 66.7
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.1e-294 1016.5 793 68.1
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 793 69.1
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.5e-291 1005.4 809 67.4
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.1e-289 1000.0 811 66.6
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.0e-287 993.4 849 63.3
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 5.0e-287 991.1 794 67.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 3.4e-280 968.4 797 67.1
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 7.7e-280 967.2 817 62.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.7e-274 949.5 795 66.2
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.4e-265 919.1 817 60.8
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.0e-264 916.0 718 70.9
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 6.3e-258 894.4 826 59.2
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.9e-254 882.9 798 60.4
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-253 880.2 797 58.3
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-234 817.0 638 69.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.6e-227 792.7 662 64.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 5.6e-214 748.4 480 80.6
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.1e-212 744.2 816 51.0
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.2e-194 683.3 851 46.5
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.2e-194 683.3 851 46.5
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 3.5e-192 676.0 876 46.3
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.6e-182 642.1 847 45.7
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.8e-181 639.8 621 58.6
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.4e-174 615.1 532 63.5
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.6e-173 614.0 655 52.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.8e-172 610.5 833 43.6
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 9.0e-172 608.2 459 67.5
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 6.3e-165 585.5 434 69.1
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 3.2e-161 573.2 601 54.4
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 8.5e-146 521.9 410 69.0
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-118 430.3 613 47.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-109 401.7 617 44.6
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.2e-88 332.0 213 82.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.6e-83 313.5 699 36.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.3e-80 305.4 776 32.1
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-78 298.5 207 73.9
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-75 288.1 197 74.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.5e-75 287.3 197 74.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.5e-75 287.3 197 74.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 6.2e-72 276.6 211 68.2
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-66 259.2 486 40.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.3e-66 258.8 236 59.7
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.0e-58 231.1 510 36.1
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 4.1e-55 220.7 121 84.3
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 4.2e-52 210.7 131 83.2
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-49 202.6 815 28.1
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-41 174.9 199 52.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.7e-41 172.9 87 86.2
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.7e-41 172.9 87 86.2
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.5e-38 165.6 92 81.5
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.5e-37 159.8 361 33.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.8e-32 144.1 130 60.0
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 9.1e-31 139.8 146 51.4
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-25 122.5 75 85.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.8e-23 115.5 89 59.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.0e-21 107.5 108 54.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 6.5e-21 107.1 71 71.8
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 9.4e-20 103.2 71 67.6
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.1e-19 102.1 57 93.0
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.0e-18 98.2 131 43.5
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.8e-18 97.1 112 45.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.4e-17 94.7 83 59.0
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 4.1e-15 87.8 77 58.4
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.5e-14 84.7 51 78.4
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-13 82.8 122 47.5
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.3e-13 82.0 59 62.7
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-11 75.9 52 78.8
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.0e-10 73.2 77 53.2
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 4.0e-10 71.2 52 75.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 51 72.5
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 3.4e-09 68.2 65 63.1
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.8e-08 65.1 130 39.2
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.7e-08 64.7 76 51.3
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.4e-07 62.0 247 27.9
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 1.6e-06 59.3 70 51.4


User provided reference genes

Program Settings