Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.7e-25 118.6 63 100.0
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 1.7e-17 92.0 60 78.3
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.9e-16 88.6 60 76.7
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.2e-16 87.8 60 76.7
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.2e-16 87.8 60 76.7
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 7.2e-16 86.7 60 75.0
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 7.2e-16 86.7 60 75.0
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 2.7e-15 84.7 61 73.8
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 2.7e-15 84.7 61 73.8
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 4.6e-15 84.0 65 66.2
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 6.1e-15 83.6 60 71.7
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 1.3e-14 82.4 63 71.4
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 1.8e-14 82.0 56 76.8
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 1.8e-14 82.0 64 67.2
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 2.3e-14 81.6 63 68.3
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 5.1e-14 80.5 61 68.9
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.5e-13 79.0 58 70.7
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 1.5e-13 79.0 59 71.2
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 1.5e-13 79.0 56 76.8
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 1.9e-13 78.6 56 71.4
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 2.5e-13 78.2 61 65.6
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 2.5e-13 78.2 60 73.3
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 3.3e-13 77.8 57 70.2
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 5.7e-13 77.0 54 70.4
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.7e-13 77.0 62 66.1
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 5.7e-13 77.0 62 66.1
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 5.7e-13 77.0 57 75.4
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 5.7e-13 77.0 64 64.1
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 7.4e-13 76.6 55 69.1
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 7.4e-13 76.6 64 65.6
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 9.7e-13 76.3 55 67.3
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.3e-12 75.9 62 64.5
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 1.3e-12 75.9 56 66.1
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.3e-12 75.9 55 67.3
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 1.3e-12 75.9 60 63.3
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.6e-12 75.5 60 66.7
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.6e-12 75.5 53 71.7
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 2.8e-12 74.7 55 74.5
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 3.7e-12 74.3 60 65.0
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 1.4e-11 72.4 59 66.1
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 1.4e-11 72.4 52 65.4
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 1.4e-11 72.4 52 65.4
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.8e-11 72.0 52 67.3
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.8e-11 72.0 64 59.4
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 2.4e-11 71.6 52 67.3
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 3.1e-11 71.2 52 67.3
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 4.1e-11 70.9 52 63.5
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 5.3e-11 70.5 59 59.3
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 9.1e-11 69.7 61 62.3
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 9.1e-11 69.7 64 59.4
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 9.1e-11 69.7 50 68.0
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.5e-10 68.9 61 62.3
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 1.5e-10 68.9 58 62.1
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 2.0e-10 68.6 65 58.5
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 2.6e-10 68.2 61 59.0
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 2.6e-10 68.2 61 59.0
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 2.6e-10 68.2 61 59.0
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.6e-10 68.2 61 59.0
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 3.4e-10 67.8 64 60.9
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 4.5e-10 67.4 61 59.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 4.5e-10 67.4 58 60.3
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 5.9e-10 67.0 54 59.3
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 5.9e-10 67.0 49 67.3
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 7.7e-10 66.6 58 58.6
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 7.7e-10 66.6 58 58.6
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 7.7e-10 66.6 55 65.5
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 1.7e-09 65.5 61 57.4
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 1.7e-09 65.5 61 57.4
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.7e-09 65.5 61 57.4
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 2.2e-09 65.1 57 64.9
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 3.8e-09 64.3 55 58.2
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 3.8e-09 64.3 65 55.4
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 5.0e-09 63.9 61 54.1
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 6.5e-09 63.5 61 54.1
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 6.5e-09 63.5 61 57.4
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 6.5e-09 63.5 53 58.5
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 7.2e-08 60.1 65 47.7
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.6e-07 58.9 53 60.4
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.7e-07 58.2 56 55.4
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 4.6e-07 57.4 48 58.3
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 4.6e-07 57.4 59 50.8
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 1.0e-06 56.2 34 70.6
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 1.0e-06 56.2 50 60.0


User provided reference genes

Program Settings