Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 0.0e+00 1234.9 630 100.0
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 5.9e-211 738.0 637 63.0
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.6e-208 728.8 640 62.5
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 5.4e-204 714.9 638 61.1
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.0e-202 710.7 632 61.1
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.9e-201 706.4 637 59.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.2e-198 697.2 639 61.7
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 4.9e-197 691.8 640 60.5
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 1.1e-196 690.6 638 59.7
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.6e-195 686.8 634 59.9
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.0e-194 681.8 631 59.7
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 9.5e-193 677.6 635 60.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.2e-192 677.2 631 60.1
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 3.6e-192 675.6 636 58.3
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 3.6e-192 675.6 636 59.0
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 6.2e-192 674.9 634 59.6
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 5.2e-191 671.8 638 57.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 2.0e-190 669.8 628 58.4
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.3e-189 667.2 702 55.4
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.9e-189 665.2 631 58.8
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 6.4e-189 664.8 633 57.0
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.6e-187 660.2 662 56.6
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.0e-186 656.0 662 56.5
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.3e-185 652.1 641 57.7
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 4.7e-184 648.7 638 55.6
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 2.1e-179 633.3 637 56.0
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.8e-179 631.3 636 56.8
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.6e-178 628.2 642 55.1
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.3e-177 625.9 636 56.3
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 2.1e-176 623.2 668 53.6
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 4.0e-175 619.0 647 53.2
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.2e-175 618.6 637 56.4
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 6.8e-175 618.2 637 54.5
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 1.5e-174 617.1 656 54.7
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 7.6e-174 614.8 639 55.1
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.3e-173 614.0 637 57.3
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 2.9e-173 612.8 635 55.0
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 8.4e-173 611.3 635 56.1
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.1e-171 606.7 635 55.6
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 2.3e-170 603.2 647 53.9
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.5e-169 600.5 639 55.4
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 5.6e-169 598.6 635 53.4
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.6e-168 597.0 638 53.8
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 4.7e-168 595.5 563 59.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.8e-167 593.6 637 53.5
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 8.9e-167 591.3 636 53.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.6e-166 589.7 612 53.9
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-166 589.3 670 51.5
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 3.4e-166 589.3 640 53.4
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 5.8e-166 588.6 640 53.9
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 9.9e-166 587.8 663 51.0
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.3e-162 577.4 638 52.2
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.7e-162 577.0 647 50.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-161 574.3 647 51.6
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.3e-160 570.9 645 52.2
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 2.1e-160 570.1 635 52.3
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 4.8e-160 568.9 637 51.2
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.4e-159 567.4 634 52.5
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 1.8e-159 567.0 651 51.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.5e-158 563.9 642 52.0
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.6e-158 563.1 637 52.1
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.2e-155 554.3 642 49.1
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 5.1e-154 548.9 503 59.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 5.1e-154 548.9 615 51.7
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 5.1e-154 548.9 613 52.7
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 4.3e-153 545.8 627 51.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 7.4e-153 545.0 651 49.6
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.6e-152 543.9 646 50.3
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.8e-152 543.1 646 50.5
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 4.8e-152 542.3 610 50.5
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 8.1e-152 541.6 502 59.8
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.4e-151 540.8 613 50.2
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.4e-151 540.8 607 50.2
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 3.1e-151 539.7 623 49.1
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 9.0e-151 538.1 637 49.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 4.5e-150 535.8 613 49.4
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.3e-149 534.3 633 50.6
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 6.4e-149 531.9 631 49.4
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.6e-147 527.3 610 49.2
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.0e-146 524.6 610 51.5
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.3e-146 523.5 641 51.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 1.1e-145 521.2 640 49.2
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.9e-145 520.4 642 48.6
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 2.1e-144 516.9 660 48.2
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 8.1e-144 515.0 640 49.1
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 3.1e-143 513.1 668 46.9
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.1e-143 513.1 614 50.2
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.3e-143 512.3 651 47.5
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.6e-142 510.0 643 49.1
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 3.8e-141 506.1 635 47.1
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.2e-140 503.1 636 46.7
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.5e-140 502.3 656 47.4
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 9.3e-140 501.5 635 46.8
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.6e-139 500.7 635 46.9
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.1e-139 500.4 635 48.3
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 2.3e-138 496.9 640 48.0
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.1e-137 494.6 654 46.6
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.1e-137 494.6 636 46.2
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.5e-137 494.2 636 46.2
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 7.4e-137 491.9 638 46.9
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 8.2e-136 488.4 653 46.2
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 5.3e-135 485.7 607 47.9
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.9e-135 485.3 650 47.4
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.5e-134 482.6 605 47.4
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 4.5e-134 482.6 607 47.8
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 6.5e-133 478.8 610 46.9
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.6e-131 474.2 607 47.4
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.6e-131 474.2 621 48.5
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.8e-130 470.7 607 47.1
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 6.7e-130 468.8 634 44.6
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.3e-128 462.2 643 44.6
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 6.3e-128 462.2 611 44.5
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.8e-127 460.7 611 44.4
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.1e-127 459.9 395 60.3
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.6e-123 447.6 625 43.5
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 1.0e-122 444.9 582 46.4
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.5e-121 440.3 644 44.9
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 7.4e-121 438.7 645 44.3
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 4.2e-116 422.9 621 43.3
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 4.2e-116 422.9 416 57.0
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 2.1e-115 420.6 628 42.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 5.7e-113 412.5 612 41.7
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 9.7e-113 411.8 637 43.3
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.6e-110 404.4 551 46.1
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 4.5e-110 402.9 649 41.6
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 8.0e-107 392.1 644 40.7
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-105 387.5 325 63.4
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 3.2e-100 370.2 614 40.7
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.5e-97 359.0 376 54.5
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.5e-92 344.7 398 50.5
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 7.2e-92 342.4 344 56.4
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.0e-90 337.0 474 44.7
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.4e-89 333.6 382 52.1
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.6e-83 313.5 274 58.4
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.8e-75 287.3 359 47.1
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.2e-73 282.0 421 46.1
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 5.4e-71 273.1 622 33.4
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.5e-68 264.2 680 30.9
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.2e-65 255.4 205 64.4
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.3e-61 241.1 467 35.1
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-61 240.7 258 53.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.5e-57 228.4 604 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.4e-57 227.3 469 34.5
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 4.4e-57 226.9 600 32.3
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 9.2e-55 219.2 251 47.8
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 9.2e-55 219.2 237 49.4
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.6e-52 209.1 263 49.0
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.6e-51 208.4 233 51.1
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 6.2e-43 179.9 290 40.3
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.2e-43 179.9 323 38.7
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 8.1e-43 179.5 254 46.1
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-42 179.1 278 41.0
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 3.2e-39 167.5 281 40.2
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.1e-38 164.9 179 51.4
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.4e-34 151.4 95 77.9
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.0e-33 148.3 203 47.8
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.5e-28 131.3 358 30.2
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 5.6e-28 130.2 253 36.8
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 9.6e-28 129.4 154 46.8
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 3.4e-25 120.9 205 41.0
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.9e-23 115.2 252 34.5
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.2e-22 112.5 220 35.0
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 4.6e-22 110.5 261 36.8
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 7.9e-22 109.8 89 65.2
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-17 95.5 218 34.4
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.2e-15 87.4 82 52.4
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 7.2e-15 86.7 250 31.2
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.2e-11 75.1 96 41.7
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 4.8e-11 73.9 198 29.8
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 8.2e-11 73.2 91 46.2
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 5.9e-09 67.0 487 22.0
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.7e-09 66.6 65 50.8


User provided reference genes

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