Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 1.9e-124 450.3 217 100.0
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 5.3e-82 309.3 214 71.0
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 2.9e-80 303.5 222 67.6
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.7e-78 297.0 222 67.6
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 2.9e-72 276.9 219 63.0
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 4.2e-71 273.1 223 61.4
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 6.3e-67 259.2 209 59.3
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 6.3e-67 259.2 215 60.9
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.4e-66 258.1 216 58.8
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 1.5e-65 254.6 191 62.8
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 2.0e-65 254.2 216 58.8
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 2.6e-65 253.8 217 59.9
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.6e-65 253.8 165 71.5
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 3.4e-65 253.4 200 63.5
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 2.2e-64 250.8 217 59.0
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 3.8e-64 250.0 207 60.9
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 8.5e-64 248.8 216 57.9
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 1.1e-63 248.4 180 65.6
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 7.2e-63 245.7 209 57.4
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 7.2e-63 245.7 214 60.3
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 9.4e-63 245.4 178 64.0
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.7e-62 243.8 195 61.0
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 6.1e-62 242.7 218 56.4
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 7.9e-62 242.3 165 68.5
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.0e-61 241.9 222 56.3
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 2.3e-61 240.7 217 56.2
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 5.7e-60 236.1 214 57.0
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 9.7e-60 235.3 171 61.4
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.7e-59 234.6 171 62.0
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 2.2e-59 234.2 212 56.6
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 3.7e-59 233.4 217 55.8
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 4.8e-59 233.0 218 54.1
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 4.8e-59 233.0 212 57.1
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 2.4e-58 230.7 174 64.4
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.4e-58 230.7 179 60.9
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 4.1e-58 229.9 214 55.6
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 5.3e-58 229.6 187 58.8
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 6.9e-58 229.2 175 58.9
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.2e-57 228.4 209 55.0
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.7e-56 224.6 210 54.8
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.2e-56 224.2 209 51.2
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.1e-55 221.9 216 50.9
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 1.9e-55 221.1 217 53.5
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.9e-55 221.1 180 58.9
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 3.2e-55 220.3 190 54.7
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 3.2e-55 220.3 202 52.5
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 9.4e-55 218.8 217 50.2
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 1.2e-54 218.4 199 56.3
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 2.7e-54 217.2 219 52.1
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 3.6e-54 216.9 216 50.0
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 4.7e-54 216.5 163 64.4
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 4.7e-54 216.5 216 50.0
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 6.1e-54 216.1 223 51.1
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 7.9e-54 215.7 203 53.7
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 1.8e-53 214.5 148 66.2
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 2.3e-53 214.2 179 53.1
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 2.3e-53 214.2 181 57.5
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 3.9e-53 213.4 205 52.7
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 8.8e-53 212.2 161 58.4
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 8.8e-53 212.2 190 53.7
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 8.8e-53 212.2 190 53.2
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-52 211.8 205 51.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.6e-52 210.7 220 52.3
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 7.4e-52 209.1 203 52.7
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 9.7e-52 208.8 214 51.9
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 8.2e-51 205.7 210 51.9
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 3.5e-49 200.3 182 53.8
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 1.3e-48 198.4 214 48.1
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 1.3e-48 198.4 214 48.1
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.2e-48 197.6 220 46.8
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 3.8e-48 196.8 228 46.5
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 3.8e-48 196.8 228 46.5
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 5.0e-48 196.4 221 48.4
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 1.1e-47 195.3 223 50.2
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 3.2e-47 193.7 214 47.7
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 5.5e-47 193.0 210 48.6
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 9.4e-47 192.2 201 48.8
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.7e-46 190.7 217 49.3
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.0e-45 188.7 203 49.3
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.0e-45 188.7 213 50.2
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 4.0e-45 186.8 201 46.8
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-44 185.3 221 46.6
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 4.4e-44 183.3 190 49.5
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 5.7e-44 183.0 221 43.9
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 2.8e-43 180.6 140 57.1
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 6.3e-43 179.5 172 49.4
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 6.3e-43 179.5 209 47.8
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 1.8e-42 177.9 186 48.4
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 8.5e-40 169.1 210 43.3
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 8.5e-40 169.1 210 43.3
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 7.2e-39 166.0 180 47.2
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 1.6e-38 164.9 166 47.0
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 6.1e-38 162.9 104 74.0
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 3.7e-35 153.7 107 65.4
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 1.4e-34 151.8 110 62.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.2e-33 148.7 115 59.1
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 6.5e-32 142.9 107 62.6
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 4.0e-29 133.7 107 57.9
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 1.3e-27 128.6 87 67.8
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.3e-27 128.6 208 40.4
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 9.2e-26 122.5 107 55.1
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 5.6e-15 86.7 219 32.0
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 5.4e-10 70.1 43 79.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 5.4e-10 70.1 43 79.1
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 3.5e-09 67.4 113 32.7
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 1.3e-08 65.5 137 27.7
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.7e-08 65.1 43 72.1
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 2.3e-08 64.7 50 56.0
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 4.3e-07 60.5 141 27.7
AagrBONN_evm.TU.Sc2ySwM_344.4827 Anthoceros agrestis HOM05D006556 ORTHO05D008146 9.5e-07 59.3 123 30.9
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 1.2e-06 58.9 127 28.3
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 8.1e-06 56.2 123 29.3


User provided reference genes

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