Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.6e-155 551.6 292 100.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 6.3e-123 444.5 292 79.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.0e-117 427.2 292 76.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.1e-117 424.9 291 77.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 6.7e-117 424.5 292 76.4
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 8.8e-117 424.1 290 77.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.6e-116 422.5 291 77.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 5.7e-116 421.4 294 75.2
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 9.7e-116 420.6 292 74.3
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 9.7e-116 420.6 261 82.4
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 9.7e-116 420.6 285 78.9
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.3e-115 420.2 293 75.1
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-115 419.9 292 74.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.8e-115 419.1 290 73.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.3e-115 417.9 290 74.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 8.2e-115 417.5 291 74.9
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.1e-114 417.2 291 75.6
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.4e-114 416.8 292 77.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.8e-114 416.4 292 75.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.1e-114 415.6 291 75.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.0e-113 412.9 293 74.4
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.4e-113 412.1 291 74.9
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 7.7e-113 411.0 286 74.1
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.0e-112 410.6 292 74.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.9e-112 409.1 286 74.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 3.8e-112 408.7 293 74.1
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.8e-112 408.7 286 73.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.8e-112 408.7 292 73.6
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 5.0e-112 408.3 292 74.0
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 6.5e-112 407.9 292 72.6
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 8.5e-112 407.5 285 71.6
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 8.5e-112 407.5 292 72.9
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.9e-111 406.4 292 74.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.5e-111 406.0 301 73.4
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.6e-110 403.3 286 72.4
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.1e-110 402.9 285 70.9
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 6.1e-110 401.4 285 70.2
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.0e-109 400.6 292 72.3
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.0e-109 400.6 286 72.0
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.3e-109 399.4 286 72.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.0e-109 399.1 286 70.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.9e-109 398.7 281 72.2
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.9e-109 398.7 273 76.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 5.2e-109 398.3 292 71.6
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 6.7e-109 397.9 290 70.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.0e-108 396.4 301 72.4
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.0e-108 396.4 292 73.3
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 3.3e-108 395.6 291 72.9
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.8e-107 392.5 296 70.9
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 3.7e-107 392.1 286 70.6
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.8e-107 391.7 246 82.5
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.8e-106 389.8 292 71.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 3.1e-106 389.0 295 69.8
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.6e-105 386.0 289 68.5
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.8e-104 382.1 293 67.2
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 5.0e-104 381.7 286 69.6
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 8.5e-104 380.9 289 69.2
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 8.5e-104 380.9 289 69.2
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 8.5e-104 380.9 289 69.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.9e-103 379.8 289 68.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.9e-103 379.8 292 72.3
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 2.5e-103 379.4 286 68.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 3.2e-103 379.0 288 69.4
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.2e-102 377.1 289 67.8
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.6e-102 376.7 286 68.9
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.6e-102 376.7 294 69.0
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.1e-102 376.3 285 69.1
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-102 375.9 288 68.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.6e-102 375.6 294 68.7
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 3.6e-102 375.6 293 66.6
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.0e-101 372.5 289 66.8
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.0e-101 372.1 284 70.8
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 4.0e-101 372.1 290 67.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.2e-101 371.7 294 66.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.7e-101 371.3 289 67.8
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.1e-100 370.5 289 67.1
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.0e-100 369.8 299 67.9
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.6e-100 369.4 289 66.4
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.3e-100 369.0 289 67.1
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-100 369.0 289 67.1
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-100 369.0 289 67.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.3e-100 369.0 284 66.9
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.4e-100 368.6 289 66.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 5.7e-100 368.2 289 67.1
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 5.7e-100 368.2 225 80.4
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 7.5e-100 367.9 288 67.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.3e-99 367.1 289 67.1
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.3e-99 367.1 231 78.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.7e-99 365.5 231 79.2
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.7e-99 365.5 286 67.8
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 6.3e-99 364.8 289 66.8
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.1e-98 362.5 285 67.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.1e-98 362.1 289 66.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 5.3e-98 361.7 281 67.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.3e-98 361.7 233 78.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 9.1e-98 360.9 294 65.6
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.0e-97 359.8 216 81.9
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.5e-97 359.0 297 65.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 3.5e-97 359.0 323 61.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.5e-97 359.0 287 65.2
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 5.9e-97 358.2 263 70.7
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.0e-96 357.5 247 76.9
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.3e-96 357.1 290 65.2
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.5e-95 352.8 289 63.3
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.5e-95 352.8 290 65.9
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.5e-92 343.6 289 64.7
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 3.7e-91 339.0 276 65.9
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.7e-89 332.8 241 71.4
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.7e-89 332.8 290 64.1
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.7e-86 322.8 286 61.2
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.7e-86 322.8 254 65.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.0e-85 320.9 297 59.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.3e-83 313.9 221 76.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.7e-83 313.5 231 68.0
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.8e-83 312.8 236 68.6
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 6.3e-83 311.6 231 67.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.3e-79 299.3 228 65.8
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 6.1e-78 295.0 247 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 7.5e-76 288.1 304 52.6
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.7e-72 276.9 238 58.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.2e-67 260.0 293 48.1
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.1e-66 257.7 267 52.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.0e-64 248.8 272 52.2
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-59 234.2 215 63.3
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.7e-59 232.6 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-58 230.7 197 53.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.1e-58 229.2 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.2e-58 228.0 197 52.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.3e-56 223.4 158 70.9
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.3e-55 218.4 142 76.8
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-51 207.6 216 58.3
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.4e-50 203.4 229 55.0
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.5e-49 199.5 140 73.6
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.1e-47 194.5 256 48.4
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-47 194.5 197 47.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.0e-44 183.7 171 59.1
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-40 170.2 191 48.7
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.4e-34 149.1 119 66.4
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.4e-31 138.7 183 40.4
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 3.7e-30 136.3 83 83.1
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-28 130.6 199 37.2
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-28 130.2 206 43.7
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 9.3e-26 121.7 99 63.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 9.3e-26 121.7 99 63.6
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 9.3e-26 121.7 244 34.0
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.1e-25 120.6 76 77.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.5e-25 119.8 215 42.8
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.3e-23 113.2 217 33.2
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.5e-18 97.1 59 79.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-17 94.7 58 77.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.5e-17 93.2 57 77.2
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.0e-16 91.7 58 75.9
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 5.1e-16 89.4 91 47.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-14 84.7 64 68.8
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-12 77.4 54 70.4
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.7e-11 74.3 51 66.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-09 68.2 90 43.3
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 3.9e-08 63.2 60 56.7
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 3.9e-08 63.2 60 56.7
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 2.5e-07 60.5 61 52.5
PSO063G3446 Papaver somniferum HOM05D004334 ORTHO05D004763 1.6e-06 57.8 68 48.5
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 2.8e-06 57.0 44 63.6
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 8.2e-06 55.5 46 58.7


User provided reference genes

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