Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1479 Cannabis sativa HOM05D008232 ORTHO05D010390 2.2e-60 235.3 111 100.0
Potri.010G248600 Populus trichocarpa HOM05D008232 ORTHO05D010390 4.6e-18 94.7 112 50.0
Prupe.3G107800 Prunus persica HOM05D008232 ORTHO05D010390 2.2e-15 85.9 113 42.5
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 2.2e-15 85.9 103 46.6
FAN02G3893 Fragaria x ananassa HOM05D008232 ORTHO05D010390 2.8e-15 85.5 110 45.5
FAN05G2300 Fragaria x ananassa HOM05D008232 ORTHO05D010390 3.7e-15 85.1 110 44.5
FvH4_6g27930 Fragaria vesca HOM05D008232 ORTHO05D010390 8.2e-15 84.0 110 45.5
FAN14G2943 Fragaria x ananassa HOM05D008232 ORTHO05D010390 1.4e-14 83.2 110 45.5
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 2.4e-14 82.4 106 45.3
Dinv23254 Davidia involucrata HOM05D008232 ORTHO05D010390 1.2e-13 80.1 112 45.5
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 1.5e-13 79.7 118 42.4
FAN09G3435 Fragaria x ananassa HOM05D008232 ORTHO05D010390 2.0e-13 79.3 103 43.7
RcHm_v2.0_Chr2g0131491 Rosa chinensis HOM05D008232 ORTHO05D010390 2.6e-13 79.0 92 47.8
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 3.4e-13 78.6 105 44.8
QL04p062033 Quercus lobata HOM05D008232 ORTHO05D010390 3.4e-13 78.6 109 45.9
Sed0014962 Sechium edule HOM05D008232 ORTHO05D010390 1.0e-12 77.0 104 43.3
Migut.I00645 Erythranthe guttata HOM05D008232 ORTHO05D010390 1.7e-12 76.3 115 44.3
MD09G1231600 Malus domestica HOM05D008232 ORTHO05D010390 1.7e-12 76.3 109 40.4
Peaxi162Scf00207g00211 Petunia axillaris HOM05D005461 ORTHO05D007157 2.2e-12 75.9 117 41.9
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 2.9e-12 75.5 111 47.7
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 8.5e-12 73.9 104 45.2
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 1.1e-11 73.6 88 44.3
Eucgr.J03142 Eucalyptus grandis HOM05D008232 ORTHO05D010390 1.1e-11 73.6 111 38.7
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 1.4e-11 73.2 104 40.4
MELO3C016243.2 Cucumis melo HOM05D008232 ORTHO05D010390 2.5e-11 72.4 104 39.4
Nitab4.5_0004890g0010 Nicotiana tabacum HOM05D008232 ORTHO05D010390 3.2e-11 72.0 93 46.2
Solyc06g068660.3 Solanum lycopersicum HOM05D008232 ORTHO05D010390 3.2e-11 72.0 109 43.1
Sopen06g025940 Solanum pennellii HOM05D008232 ORTHO05D010390 3.2e-11 72.0 109 43.1
TWI31G1109 Tripterygium wilfordii HOM05D008232 ORTHO05D010390 3.2e-11 72.0 108 41.7
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 4.2e-11 71.6 107 43.9
CsaV3_4G007020 Cucumis sativus L. HOM05D008232 ORTHO05D010390 9.4e-11 70.5 104 39.4
Oeu036452.1 Olea europaea HOM05D008232 ORTHO05D010390 9.4e-11 70.5 107 41.1
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 1.2e-10 70.1 107 43.0
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 1.6e-10 69.7 107 38.3
Cc04_g05510 Coffea canephora HOM05D000169 ORTHO05D001214 6.1e-10 67.8 93 45.2
Cfa023521 Carpinus fangiana HOM05D008232 ORTHO05D010390 1.0e-09 67.0 81 48.1
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.0e-09 67.0 106 43.4
CARHR066090 Cardamine hirsuta HOM05D008232 ORTHO05D010390 1.4e-09 66.6 110 39.1
Lsat_1_v5_gn_4_85220 Lactuca sativa HOM05D008232 ORTHO05D010390 1.8e-09 66.2 103 42.7
Aa31LG4G3390 Aethionema arabicum HOM05D008232 ORTHO05D010390 3.9e-09 65.1 119 38.7
Carub.0002s1989 Capsella rubella HOM05D008232 ORTHO05D010390 5.1e-09 64.7 118 37.3
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 5.1e-09 64.7 94 42.6
AT1G73120 Arabidopsis thaliana HOM05D008232 ORTHO05D010390 6.7e-09 64.3 118 37.3
C02p30580 Brassica napus HOM05D008232 ORTHO05D010390 6.7e-09 64.3 119 38.7
Sc10g0006360 Simmondsia chinensis HOM05D008232 ORTHO05D010390 8.8e-09 63.9 106 37.7
Sc10g0006420 Simmondsia chinensis HOM05D008232 ORTHO05D010390 8.8e-09 63.9 106 37.7
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 8.8e-09 63.9 106 40.6
AL2G32870 Arabidopsis lyrata HOM05D008232 ORTHO05D010390 1.1e-08 63.5 118 38.1
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 1.1e-08 63.5 106 34.0
THA.LOC104813941 Tarenaya hassleriana HOM05D008232 ORTHO05D010390 1.9e-08 62.8 111 37.8
Thhalv10019346m.g Eutrema salsugineum HOM05D008232 ORTHO05D010390 2.5e-08 62.4 118 37.3
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 5.7e-08 61.2 107 36.4
SalBow7G0137 Salvia bowleyana HOM05D008232 ORTHO05D010390 5.7e-08 61.2 96 41.7
Hund22378 Selenicereus undatus HOM05D008232 ORTHO05D010390 7.4e-08 60.8 100 39.0
A07p39100 Brassica napus HOM05D008232 ORTHO05D010390 9.7e-08 60.5 112 35.7
BraA07t31461Z Brassica rapa HOM05D008232 ORTHO05D010390 9.7e-08 60.5 112 36.6
A02p18450 Brassica napus HOM05D008232 ORTHO05D010390 1.3e-07 60.1 114 36.0
BraA02t06884Z Brassica rapa HOM05D008232 ORTHO05D010390 1.3e-07 60.1 114 36.0
ClCG07G011230 Citrullus lanatus HOM05D008232 ORTHO05D010390 1.3e-07 60.1 93 36.6
Sp5g28080 Schrenkiella parvula HOM05D008232 ORTHO05D010390 1.3e-07 60.1 118 36.4
BolC6t39770H Brassica oleracea HOM05D008232 ORTHO05D010390 2.8e-07 58.9 112 36.6
C06p47310 Brassica napus HOM05D008232 ORTHO05D010390 3.7e-07 58.5 112 36.6
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 5.3e-06 54.7 63 41.3
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 9.1e-06 53.9 57 45.6


User provided reference genes

Program Settings