Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.8e-70 268.5 132 100.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 3.0e-32 142.1 187 48.7
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.8e-30 134.8 182 46.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.1e-29 132.1 182 45.1
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.1e-29 131.7 182 45.1
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 5.3e-29 131.3 173 46.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.0e-27 127.1 173 46.2
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.0e-27 127.1 187 43.9
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.7e-27 126.3 187 43.3
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.7e-27 126.3 173 46.2
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 2.9e-27 125.6 173 46.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 5.0e-27 124.8 173 45.1
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 5.0e-27 124.8 173 45.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 5.0e-27 124.8 173 45.1
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 6.5e-27 124.4 173 45.7
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 6.5e-27 124.4 156 48.1
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 6.5e-27 124.4 173 46.2
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 6.5e-27 124.4 173 45.7
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.1e-26 123.6 173 46.2
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.1e-26 123.6 173 45.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-26 123.6 187 42.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.4e-26 123.2 173 43.9
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.9e-26 122.9 176 44.3
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.5e-26 122.5 176 44.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.5e-26 122.5 176 44.9
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 3.2e-26 122.1 176 42.6
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.2e-26 121.7 173 44.5
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.5e-26 121.3 173 45.1
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.5e-26 121.3 173 43.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 5.5e-26 121.3 173 44.5
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 7.2e-26 120.9 173 44.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 7.2e-26 120.9 173 44.5
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 9.4e-26 120.6 173 43.9
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.2e-25 120.2 187 42.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.6e-25 119.8 173 44.5
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.6e-25 119.8 173 43.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.7e-25 119.0 176 41.5
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 3.6e-25 118.6 187 41.2
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 4.7e-25 118.2 174 42.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 6.1e-25 117.9 173 43.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 6.1e-25 117.9 177 44.1
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 6.1e-25 117.9 177 44.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.0e-24 117.1 156 45.5
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.0e-24 117.1 173 42.2
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.4e-24 116.7 156 44.9
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.4e-24 116.7 173 43.4
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.8e-24 116.3 173 41.0
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.8e-24 116.3 177 43.5
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.8e-24 116.3 173 42.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.3e-24 115.9 156 44.9
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.3e-24 115.9 174 42.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.0e-24 115.5 176 41.5
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.0e-24 115.5 176 41.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.0e-24 115.5 174 42.0
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.0e-24 115.5 174 42.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 3.9e-24 115.2 173 41.0
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.9e-24 115.2 156 44.2
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.9e-24 115.2 177 43.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.9e-24 115.2 175 41.1
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 5.1e-24 114.8 174 41.4
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 5.1e-24 114.8 173 43.4
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 6.7e-24 114.4 173 41.6
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 6.7e-24 114.4 173 41.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 6.7e-24 114.4 173 41.0
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.7e-24 114.4 169 43.8
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 6.7e-24 114.4 174 40.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.1e-23 113.6 176 40.9
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.5e-23 113.2 172 39.5
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.5e-23 113.2 174 41.4
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.5e-23 113.2 174 41.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.5e-23 113.2 174 41.4
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.5e-23 113.2 173 42.2
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.5e-23 113.2 176 38.1
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.0e-23 112.8 174 41.4
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.0e-23 112.8 174 41.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.6e-23 112.5 176 40.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 2.6e-23 112.5 156 44.9
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.6e-23 112.5 173 42.2
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.3e-23 112.1 176 38.6
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 4.4e-23 111.7 170 42.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.4e-23 111.7 174 40.2
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.4e-23 111.7 174 41.4
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 5.7e-23 111.3 169 40.8
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 7.4e-23 110.9 173 41.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 9.7e-23 110.5 172 39.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.7e-22 109.8 171 40.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.2e-22 109.4 172 42.4
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.2e-22 109.4 174 40.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.8e-22 109.0 156 44.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.7e-22 108.6 164 41.5
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.7e-22 108.6 154 42.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.8e-22 108.2 174 40.8
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 6.3e-22 107.8 174 41.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 8.2e-22 107.5 169 40.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 8.2e-22 107.5 174 40.2
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-21 106.7 174 40.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-21 106.7 174 40.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-21 106.7 174 40.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-21 106.7 174 40.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.4e-21 106.7 174 40.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.8e-21 106.3 156 41.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.8e-21 106.3 173 39.9
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.8e-21 106.3 172 38.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.1e-21 105.5 155 40.0
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.1e-21 105.1 158 43.0
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.2e-20 103.6 175 40.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.0e-20 102.8 156 41.0
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 3.4e-20 102.1 173 38.2
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.5e-20 101.7 174 39.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 4.5e-20 101.7 173 37.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 5.9e-20 101.3 156 39.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 7.7e-20 100.9 173 38.7
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.0e-19 100.5 172 37.2
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.0e-19 100.5 156 39.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.0e-19 100.5 169 36.7
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.2e-19 99.4 176 36.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.9e-19 99.0 156 39.1
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 5.0e-19 98.2 156 40.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.0e-19 98.2 156 40.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 6.5e-19 97.8 173 35.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 6.5e-19 97.8 174 37.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 8.5e-19 97.4 156 39.1
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.4e-18 96.7 173 35.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.4e-18 94.0 173 37.0
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-17 93.6 156 38.5
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-17 93.6 173 35.8
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-17 93.6 156 38.5
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-17 93.6 156 38.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.2e-17 93.6 173 35.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.2e-17 93.6 156 38.5
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.6e-17 93.2 164 37.8
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.7e-17 92.4 154 42.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 8.0e-17 90.9 173 35.3
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 8.0e-17 90.9 173 35.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 8.0e-17 90.9 173 35.3
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.4e-16 90.1 174 37.4
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.8e-16 89.7 169 32.5
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 3.0e-16 89.0 187 31.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.1e-15 87.0 113 47.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 4.8e-14 81.6 168 33.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.0e-11 73.9 47 74.5
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.1e-09 66.2 160 26.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.0e-08 62.4 63 54.0
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 5.7e-07 58.2 77 41.6
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 5.7e-07 58.2 77 41.6


User provided reference genes

Program Settings