Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 6.0e-144 514.2 274 100.0
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-126 456.4 273 85.3
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-126 456.4 273 85.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 3.3e-126 455.3 273 85.3
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.7e-125 451.8 273 84.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.2e-123 446.8 273 83.5
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.5e-123 446.4 273 83.5
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.0e-123 446.0 273 83.9
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 7.7e-123 444.1 273 82.8
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.0e-122 443.7 273 82.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-122 443.0 284 81.7
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.5e-121 439.1 273 82.4
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.5e-121 439.1 274 83.2
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.2e-121 438.7 273 81.7
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 4.2e-121 438.3 273 83.9
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 5.5e-121 438.0 271 84.5
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 7.2e-121 437.6 274 82.8
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-120 436.4 273 82.8
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.0e-119 433.7 274 82.5
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.0e-119 433.7 273 82.1
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.3e-119 432.6 274 83.2
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 3.9e-119 431.8 275 84.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.9e-119 431.8 274 81.8
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.9e-119 431.8 273 82.1
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 6.7e-119 431.0 274 81.0
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 8.8e-119 430.6 274 81.8
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.5e-118 429.9 271 81.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.0e-118 429.5 274 82.8
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.6e-118 429.1 275 81.8
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 4.4e-118 428.3 274 82.1
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.3e-117 426.8 275 81.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.3e-117 426.8 275 81.5
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.7e-117 426.4 274 81.4
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.2e-117 426.0 271 80.8
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.8e-117 425.6 275 81.1
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 6.3e-117 424.5 275 80.4
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 6.3e-117 424.5 274 81.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 8.2e-117 424.1 269 82.2
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 8.2e-117 424.1 269 81.8
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 8.2e-117 424.1 269 81.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.1e-116 423.7 274 79.9
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.4e-116 423.3 274 82.1
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.8e-116 422.9 272 80.5
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 2.4e-116 422.5 274 80.3
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.1e-116 422.2 271 80.8
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 5.3e-116 421.4 268 80.6
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 7.0e-116 421.0 272 79.8
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.2e-115 420.2 275 80.4
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.6e-115 419.9 271 79.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.6e-115 419.9 275 80.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.6e-115 419.1 272 80.5
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.5e-115 418.7 271 81.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.9e-115 417.9 269 79.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.0e-114 417.2 274 79.2
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.0e-114 417.2 269 79.9
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.0e-114 417.2 271 80.8
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.7e-114 416.4 273 79.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.2e-114 416.0 305 75.4
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.9e-114 415.6 275 79.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 5.0e-114 414.8 271 79.7
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 5.0e-114 414.8 271 79.7
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.9e-113 412.9 274 77.7
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 4.2e-113 411.8 289 76.1
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 4.2e-113 411.8 269 81.4
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.2e-113 411.8 272 77.9
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 9.4e-113 410.6 273 78.4
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 9.4e-113 410.6 277 77.6
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.2e-112 410.2 271 78.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.1e-112 409.5 274 77.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 78.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 3.6e-112 408.7 271 78.2
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 77.4
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.1e-112 407.9 274 77.0
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 8.0e-112 407.5 274 78.1
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.8e-111 406.4 274 77.7
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.8e-111 406.4 269 79.9
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-111 406.0 274 77.7
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-111 405.6 274 77.7
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 77.4
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 77.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 5.2e-111 404.8 268 76.9
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-110 403.7 274 77.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.2e-110 403.7 268 76.9
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.5e-110 403.3 274 77.4
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 77.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.0e-110 402.9 269 79.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 3.3e-110 402.1 274 77.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 3.3e-110 402.1 276 77.2
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 5.7e-110 401.4 274 77.4
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.8e-109 399.1 282 74.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 2.4e-108 396.0 273 74.7
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.1e-108 395.6 269 75.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 75.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 75.5
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 75.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.2e-106 389.4 273 75.8
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-105 387.1 274 75.2
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.2e-104 383.6 265 75.1
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.0e-103 380.6 278 74.1
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.0e-103 380.6 364 60.4
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.8e-103 379.8 316 66.5
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.8e-103 379.8 332 64.2
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.7e-102 374.8 269 72.9
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 7.5e-102 374.4 287 69.0
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-101 373.2 261 74.3
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.8e-101 371.7 321 65.1
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.5e-97 360.1 247 76.5
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.5e-97 359.4 268 69.0
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 5.5e-97 358.2 253 72.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.5e-97 358.2 266 67.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.2e-96 357.1 268 68.3
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.3e-95 352.8 265 69.4
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 4.0e-95 352.1 266 67.3
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.8e-94 347.4 262 67.6
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-90 337.0 271 61.3
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.6e-88 328.9 483 45.5
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.0e-88 327.8 211 83.4
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.0e-87 327.4 483 45.3
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.0e-86 323.2 272 59.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 7.0e-84 314.7 253 67.2
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 2.0e-83 313.2 269 61.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 8.6e-82 307.8 266 60.9
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.6e-82 307.8 262 60.3
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-81 306.2 253 66.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-79 300.8 280 60.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-79 300.1 256 65.6
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-79 300.1 280 60.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.0e-79 298.9 262 59.5
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-79 298.9 257 65.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.4e-78 295.8 262 59.2
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-77 293.1 280 60.0
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-77 292.4 280 59.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.2e-76 289.3 262 57.3
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.3e-73 278.9 296 58.1
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.2e-72 277.3 274 54.4
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 6.2e-72 275.0 259 62.2
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-71 271.6 253 62.1
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.5e-70 270.4 161 84.5
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 8.3e-69 264.6 226 64.6
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 8.3e-69 264.6 263 52.9
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 9.2e-68 261.2 281 55.9
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 6.6e-66 255.0 254 57.9
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 6.4e-61 238.4 137 85.4
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 7.1e-60 235.0 263 49.4
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.6e-58 228.0 269 50.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-56 223.8 250 52.0
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-53 213.8 267 50.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.2e-52 209.5 129 83.7
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.8e-48 195.7 136 75.7
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.9e-45 185.7 161 65.8
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.4e-45 184.9 131 71.8
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.3e-44 181.4 148 66.2
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 7.9e-43 178.3 417 36.7
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 3.9e-42 176.0 136 64.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.8e-40 169.9 218 48.2
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.4e-38 162.9 97 83.5
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.5e-38 162.5 129 67.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.1e-36 155.2 100 81.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.6e-30 135.2 141 54.6
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.5e-28 130.2 139 55.4
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 4.2e-28 129.4 261 33.7
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 8.7e-26 121.7 263 32.7
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.5e-25 120.9 293 30.0
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.1e-23 114.8 70 85.7
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 7.6e-22 108.6 150 46.7
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.7e-19 100.1 67 73.1
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-18 97.1 58 81.0
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 5.1e-18 95.9 82 59.8
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.5e-17 93.6 69 68.1
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 4.3e-17 92.8 53 83.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.3e-17 92.8 59 81.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-17 92.4 52 88.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 7.4e-17 92.0 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 7.4e-17 92.0 52 86.5
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 9.7e-17 91.7 71 69.0
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 52 86.5
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-16 89.7 52 86.5
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-15 86.3 50 84.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.3e-13 81.3 72 58.3
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-13 81.3 72 58.3
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.1e-12 78.2 67 61.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-12 77.8 72 55.6
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.2e-12 76.6 72 55.6
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 4.1e-07 59.7 40 72.5
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 6.9e-07 58.9 52 57.7


User provided reference genes

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