Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 6.8e-57 223.8 114 100.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 5.8e-48 194.1 104 92.3
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 8.3e-47 190.3 104 91.3
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 8.3e-47 190.3 111 82.9
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.3e-47 190.3 104 90.4
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.4e-46 189.5 100 93.0
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.9e-46 189.1 104 89.4
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.1e-46 188.0 104 89.4
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-46 188.0 104 88.5
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-46 188.0 104 88.5
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 5.4e-46 187.6 104 87.5
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.4e-46 187.6 104 89.4
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 9.2e-46 186.8 104 88.5
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.2e-45 186.4 104 87.5
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.2e-45 186.4 104 90.4
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.6e-45 186.0 100 93.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.6e-45 186.0 104 87.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.0e-45 185.7 104 89.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.7e-45 185.3 108 83.3
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.7e-45 185.3 104 88.5
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.7e-45 185.3 104 87.5
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.7e-45 185.3 114 84.2
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 3.5e-45 184.9 104 87.5
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 6.0e-45 184.1 102 89.2
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 6.0e-45 184.1 104 87.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 6.0e-45 184.1 104 87.5
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 6.0e-45 184.1 104 86.5
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 6.0e-45 184.1 104 87.5
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 7.8e-45 183.7 102 89.2
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.0e-44 183.3 100 91.0
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.0e-44 183.3 101 85.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.0e-44 183.3 108 84.3
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.0e-44 183.3 104 87.5
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.0e-44 183.3 104 85.6
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.7e-44 182.6 104 86.5
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.7e-44 182.6 104 86.5
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.7e-44 182.6 102 87.3
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.3e-44 182.2 100 90.0
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 3.0e-44 181.8 104 84.6
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 3.0e-44 181.8 100 86.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.9e-44 181.4 108 79.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.9e-44 181.4 100 86.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.9e-44 181.4 100 89.0
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.0e-44 181.0 104 84.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 5.0e-44 181.0 104 84.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 5.0e-44 181.0 104 85.6
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 6.6e-44 180.6 104 85.6
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 6.6e-44 180.6 104 84.6
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.6e-44 180.6 104 84.6
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.6e-44 180.6 104 84.6
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.6e-44 180.6 104 84.6
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.6e-44 180.6 107 83.2
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 6.6e-44 180.6 107 83.2
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 6.6e-44 180.6 104 84.6
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 8.6e-44 180.3 104 85.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.5e-43 179.5 112 82.1
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.5e-43 179.5 107 82.2
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.5e-43 179.5 102 87.3
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.9e-43 179.1 111 80.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.9e-43 179.1 104 84.6
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 2.5e-43 178.7 103 82.5
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.5e-43 178.7 105 85.7
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.3e-43 178.3 100 88.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 4.3e-43 177.9 107 81.3
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 4.3e-43 177.9 104 83.7
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.6e-43 177.6 114 78.1
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.6e-43 177.6 99 85.9
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 5.6e-43 177.6 100 86.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 7.3e-43 177.2 114 81.6
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 7.3e-43 177.2 108 84.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 7.3e-43 177.2 100 86.0
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 7.3e-43 177.2 108 81.5
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.2e-42 176.4 100 85.0
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.6e-42 176.0 104 81.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.6e-42 176.0 104 82.7
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.1e-42 175.6 104 81.7
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.1e-42 175.6 107 81.3
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 2.1e-42 175.6 98 83.7
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.8e-42 175.3 98 86.7
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.6e-42 174.9 110 79.1
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.6e-42 174.9 99 84.8
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 3.6e-42 174.9 107 79.4
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 4.7e-42 174.5 98 82.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.1e-41 173.3 98 86.7
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.4e-41 172.9 107 79.4
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-41 172.9 107 80.4
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.8e-41 172.6 103 81.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 3.1e-41 171.8 104 80.8
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.1e-41 171.8 99 83.8
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 4.0e-41 171.4 98 81.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 5.2e-41 171.0 100 83.0
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 5.2e-41 171.0 103 79.6
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 6.8e-41 170.6 100 82.0
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 8.9e-41 170.2 100 84.0
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.2e-40 169.9 104 77.9
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.5e-40 169.5 98 82.7
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.5e-40 169.5 98 80.6
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.6e-40 168.7 100 83.0
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 7.5e-40 167.2 100 82.0
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 9.8e-40 166.8 104 81.7
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 2.2e-39 165.6 112 75.0
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.9e-39 165.2 95 87.4
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 6.4e-39 164.1 111 75.7
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 6.4e-39 164.1 111 75.7
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 6.4e-39 164.1 101 79.2
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 6.4e-39 164.1 112 75.0
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 8.3e-39 163.7 104 76.9
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.9e-38 162.5 102 80.4
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 4.1e-38 161.4 104 78.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 7.1e-38 160.6 100 81.0
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 6.0e-37 157.5 103 75.7
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 7.8e-37 157.1 100 76.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.3e-36 155.6 112 68.8
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 5.1e-36 154.5 103 70.9
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 6.6e-36 154.1 112 67.9
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 8.6e-36 153.7 106 68.9
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 8.6e-36 153.7 103 70.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 8.6e-36 153.7 103 70.9
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.3e-35 151.8 104 70.2
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.6e-35 151.0 103 68.9
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.6e-35 151.0 103 68.9
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 5.6e-35 151.0 103 68.9
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 9.5e-35 150.2 103 68.0
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.1e-34 149.1 103 68.9
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 2.8e-34 148.7 98 70.4
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.8e-34 148.7 103 68.0
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-33 146.4 104 68.3
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-33 146.4 104 68.3
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-33 146.4 104 68.3
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.4e-33 146.4 104 68.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.2e-33 144.4 104 74.0
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 2.6e-32 142.1 103 66.0
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.6e-32 140.6 105 65.7
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 7.6e-32 140.6 99 69.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.3e-31 139.8 87 79.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.7e-31 139.4 102 64.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 3.2e-30 135.2 84 83.3
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 3.5e-29 131.7 104 67.3
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.0e-28 128.6 66 92.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.5e-27 126.3 112 54.5
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.9e-27 125.9 81 72.8
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.0e-25 118.2 65 86.2
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 5.2e-25 117.9 96 62.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-24 116.7 96 62.5
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 2.0e-24 115.9 75 80.0
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.7e-23 112.8 88 67.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 4.9e-23 111.3 87 63.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.9e-22 109.4 96 60.4
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 5.4e-22 107.8 97 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.3e-20 103.2 86 59.3
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 3.0e-20 102.1 56 83.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.3e-19 98.2 78 65.4
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.1e-18 95.9 54 87.0
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.1e-18 95.9 57 82.5
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.4e-17 92.4 86 55.8
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.2e-16 90.1 64 76.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.0e-16 89.4 61 75.4
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 7.1e-14 80.9 104 46.2
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 5.1e-12 74.7 88 46.6
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 5.3e-09 64.7 41 78.0
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 7.6e-08 60.8 95 41.1


User provided reference genes

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