Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.3e-61 239.6 123 100.0
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.7e-53 212.6 127 85.0
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.7e-53 212.6 127 85.0
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.4e-52 209.5 127 83.5
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 5.4e-52 207.6 123 84.6
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.1e-51 205.7 129 82.2
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.1e-51 205.7 127 81.1
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.5e-51 204.9 140 77.9
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.5e-51 204.9 140 77.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.3e-50 203.0 130 82.3
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 3.0e-50 201.8 127 81.9
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 3.9e-50 201.4 124 81.5
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 5.1e-50 201.1 127 81.1
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 5.1e-50 201.1 120 83.3
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 5.1e-50 201.1 120 81.7
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 5.1e-50 201.1 128 81.2
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 6.6e-50 200.7 129 79.8
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 8.7e-50 200.3 122 81.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 8.7e-50 200.3 122 81.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 8.7e-50 200.3 122 81.1
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 8.7e-50 200.3 117 86.3
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.1e-49 199.9 123 84.6
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.5e-49 199.5 131 80.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 4.3e-49 198.0 115 86.1
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 7.3e-49 197.2 147 72.1
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 7.3e-49 197.2 147 72.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 9.6e-49 196.8 125 78.4
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.3e-48 196.4 126 78.6
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 1.3e-48 196.4 128 78.9
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.6e-48 196.1 124 82.3
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.1e-48 195.7 126 79.4
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 6.2e-48 194.1 124 81.5
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.4e-47 193.0 128 76.6
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.4e-47 192.2 125 78.4
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.4e-47 192.2 127 78.7
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 5.3e-47 191.0 128 75.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 6.9e-47 190.7 125 75.2
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.5e-46 189.5 122 80.3
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.5e-46 189.5 128 78.1
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 2.0e-46 189.1 125 78.4
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.4e-46 188.3 124 78.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 5.8e-46 187.6 125 77.6
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 5.8e-46 187.6 123 77.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 5.8e-46 187.6 126 79.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 7.6e-46 187.2 122 77.0
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 7.6e-46 187.2 118 79.7
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 9.9e-46 186.8 115 80.9
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.2e-45 185.7 126 74.6
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 3.8e-45 184.9 118 78.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 4.9e-45 184.5 118 78.8
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 6.4e-45 184.1 116 81.0
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.4e-45 184.1 114 79.8
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.4e-44 183.0 127 72.4
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.9e-44 182.6 116 80.2
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.4e-44 182.2 126 74.6
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 7.1e-44 180.6 116 78.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.2e-43 179.9 115 77.4
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 3.5e-43 178.3 126 71.4
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 4.6e-43 177.9 128 74.2
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 6.0e-43 177.6 126 73.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.3e-42 176.4 116 76.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.3e-42 176.4 114 78.1
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.3e-42 175.6 116 77.6
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 3.0e-42 175.3 113 78.8
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.9e-42 174.9 127 74.0
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 5.1e-42 174.5 130 71.5
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 6.7e-42 174.1 131 71.8
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.9e-41 172.6 116 74.1
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 2.5e-41 172.2 129 69.8
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 3.3e-41 171.8 140 67.1
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 2.1e-40 169.1 117 73.5
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 3.7e-40 168.3 113 77.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-40 168.3 121 74.4
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-40 168.3 113 76.1
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 6.2e-40 167.5 123 66.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.4e-39 166.4 120 74.2
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.4e-39 165.6 120 70.0
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.0e-39 164.9 158 60.1
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 6.9e-39 164.1 122 69.7
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.0e-39 163.7 123 69.9
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.5e-38 162.9 119 67.2
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 5.8e-38 161.0 127 68.5
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 5.8e-38 161.0 115 71.3
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.3e-37 159.8 115 70.4
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 2.2e-37 159.1 119 66.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 4.9e-37 157.9 179 53.1
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 4.9e-37 157.9 131 68.7
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.4e-37 157.1 115 73.0
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.1e-36 156.8 139 63.3
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 3.2e-36 155.2 119 68.9
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.1e-36 154.1 115 72.2
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.2e-35 153.3 113 67.3
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.6e-35 152.9 115 67.8
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.7e-35 152.1 121 64.5
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.8e-34 149.4 111 66.7
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 3.0e-34 148.7 90 78.9
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 3.0e-34 148.7 107 70.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.7e-34 147.5 113 70.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.1e-33 146.7 112 64.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 2.5e-33 145.6 115 63.5
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.3e-33 145.2 88 77.3
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 5.6e-33 144.4 155 54.2
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.6e-33 143.7 116 61.2
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 1.3e-32 143.3 124 64.5
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 2.1e-32 142.5 124 65.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.7e-32 141.7 85 80.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.8e-31 139.4 128 58.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 4.0e-31 138.3 125 57.6
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 4.5e-30 134.8 121 57.9
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.0e-29 133.7 121 57.9
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.7e-29 132.9 100 68.0
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 3.8e-29 131.7 116 56.9
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 6.5e-29 131.0 179 45.8
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-28 129.8 111 65.8
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.4e-28 129.8 111 65.8
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 3.2e-28 128.6 132 57.6
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 7.1e-28 127.5 84 73.8
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.7e-27 125.6 119 58.0
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 4.6e-27 124.8 70 85.7
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.8e-26 122.9 105 58.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 5.1e-26 121.3 69 84.1
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.1e-23 113.6 70 77.1
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.5e-22 109.8 94 60.6
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 3.6e-19 98.6 82 63.4
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.8e-16 89.0 79 63.3
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 2.0e-14 82.8 51 76.5
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 4.5e-14 81.6 76 51.3
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 5.0e-13 78.2 51 72.5
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 4.7e-11 71.6 49 67.3
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 2.2e-08 62.8 62 58.1
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 5.9e-06 54.7 54 59.3


User provided reference genes

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