Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 3.2e-90 335.1 174 100.0
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 9.0e-69 263.8 174 77.6
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 2.0e-68 262.7 174 78.7
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.2e-67 259.2 174 77.0
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 3.8e-67 258.5 174 76.4
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 1.1e-66 256.9 173 74.6
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.4e-66 256.5 174 74.7
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.5e-66 255.8 174 73.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 5.5e-66 254.6 173 75.1
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.6e-65 253.1 173 72.3
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 1.6e-65 253.1 173 72.8
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.1e-65 252.7 173 74.6
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 7.9e-65 250.8 174 73.6
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 7.9e-65 250.8 174 73.6
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 1.0e-64 250.4 174 73.6
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.3e-64 250.0 172 72.1
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 1.3e-64 250.0 174 74.1
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 2.3e-64 249.2 173 74.6
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 5.1e-64 248.1 174 72.4
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 5.1e-64 248.1 181 69.6
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.9e-63 246.1 173 70.5
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 4.3e-63 245.0 174 70.7
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.3e-62 243.4 174 71.8
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.7e-62 243.0 172 69.8
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.7e-62 243.0 174 72.4
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 2.2e-62 242.7 175 69.7
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 8.2e-62 240.7 174 70.7
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 8.2e-62 240.7 171 70.2
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 1.1e-61 240.4 173 72.3
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.1e-61 240.4 170 68.8
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.4e-61 240.0 168 72.6
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.8e-61 239.6 174 71.3
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 1.8e-61 239.6 171 69.6
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 5.3e-61 238.0 166 74.1
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.5e-60 236.5 171 68.4
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.0e-60 236.1 186 67.2
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 2.6e-60 235.7 167 73.1
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 2.6e-60 235.7 172 68.6
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.4e-60 235.3 168 74.4
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 7.7e-60 234.2 172 66.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.0e-59 233.8 168 68.5
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.3e-59 233.4 173 67.6
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 2.2e-59 232.6 174 67.2
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.0e-59 231.5 188 66.0
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 8.5e-59 230.7 170 67.6
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 8.5e-59 230.7 172 68.0
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 1.1e-58 230.3 174 64.9
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.1e-58 230.3 174 68.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.4e-58 229.9 166 69.9
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 3.2e-58 228.8 164 72.0
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 1.2e-57 226.9 174 66.1
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.2e-57 226.9 174 67.8
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.6e-57 226.5 174 64.4
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 2.1e-57 226.1 174 64.4
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 2.1e-57 226.1 169 69.2
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 2.1e-57 226.1 174 66.1
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.7e-57 225.7 170 70.6
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.6e-57 225.3 174 66.1
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 4.7e-57 224.9 165 71.5
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.7e-57 224.9 169 68.6
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 6.1e-57 224.6 174 65.5
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.8e-56 223.0 172 65.7
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 3.9e-56 221.9 175 65.7
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 3.9e-56 221.9 175 65.7
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 8.8e-56 220.7 173 64.7
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 1.1e-55 220.3 165 68.5
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.5e-55 219.9 175 65.1
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.5e-55 219.9 175 65.1
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 3.3e-55 218.8 166 69.3
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 4.4e-55 218.4 174 64.4
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 3.7e-54 215.3 165 67.9
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 4.8e-54 214.9 165 68.5
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 3.1e-53 212.2 249 52.6
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 4.1e-53 211.8 165 64.8
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.2e-52 210.3 163 65.6
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 2.6e-52 209.1 136 76.5
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 4.5e-52 208.4 172 64.5
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.3e-51 206.8 165 66.1
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.3e-51 206.8 203 55.7
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 1.7e-51 206.5 166 65.7
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.2e-51 206.1 137 75.2
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 3.8e-51 205.3 174 61.5
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 8.5e-51 204.1 153 69.9
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.1e-50 203.8 166 62.0
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 5.5e-50 201.4 162 62.3
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.7e-49 199.1 166 59.0
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 3.6e-49 198.7 140 69.3
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 4.7e-49 198.4 140 72.1
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 8.8e-48 194.1 177 59.3
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.0e-47 193.0 147 68.0
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 8.2e-46 187.6 135 68.9
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 8.2e-46 187.6 195 51.8
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 8.5e-43 177.6 138 68.1
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 2.5e-42 176.0 138 67.4
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 1.2e-41 173.7 114 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 8.2e-38 161.0 165 47.9
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.4e-37 160.2 171 47.4
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.8e-37 159.8 118 66.9
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.2e-36 157.1 123 67.5
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 5.0e-35 151.8 136 62.5
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 5.0e-35 151.8 165 44.8
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 4.2e-34 148.7 135 55.6
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.7e-30 135.6 109 63.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 4.1e-29 132.1 156 42.9
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 1.3e-22 110.5 88 62.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 4.7e-17 92.0 53 86.8
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.8e-15 84.3 70 65.7
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 3.9e-11 72.4 48 81.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.6e-09 67.0 144 29.9
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.1e-09 66.6 42 71.4
DCAR_021794 Daucus carota HOM05D001420 ORTHO05D009292 8.3e-06 54.7 35 80.0


User provided reference genes

Program Settings