Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.4e-60 236.1 117 100.0
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 1.4e-28 129.8 126 60.3
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 4.0e-28 128.3 123 59.3
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 8.9e-28 127.1 125 57.6
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 8.9e-28 127.1 125 57.6
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.0e-27 125.9 124 58.9
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.4e-27 125.2 123 59.3
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.4e-27 125.2 123 59.3
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 7.5e-27 124.0 125 56.8
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.3e-26 123.2 123 58.5
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 6.0e-24 114.4 110 58.2
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 3.9e-23 111.7 125 53.6
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.9e-22 109.4 129 51.9
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.3e-22 108.6 110 55.5
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 3.3e-22 108.6 128 50.0
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 4.3e-22 108.2 127 52.0
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 7.3e-22 107.5 126 51.6
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 7.3e-22 107.5 121 49.6
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.2e-21 106.7 125 52.8
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 2.8e-21 105.5 112 52.7
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 8.0e-21 104.0 91 64.8
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.4e-20 103.2 129 48.8
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 3.1e-20 102.1 128 47.7
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.0e-20 101.7 85 63.5
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 5.2e-20 101.3 110 54.5
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 5.2e-20 101.3 130 47.7
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 8.9e-20 100.5 122 54.1
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.4e-19 98.6 86 61.6
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 4.4e-19 98.2 129 46.5
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 9.8e-19 97.1 107 53.3
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 9.8e-19 97.1 84 61.9
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 9.8e-19 97.1 123 48.8
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 9.8e-19 97.1 126 49.2
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 3.7e-18 95.1 109 54.1
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 6.4e-18 94.4 112 51.8
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 6.4e-18 94.4 127 47.2
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.4e-17 93.2 116 50.0
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 1.9e-17 92.8 129 46.5
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.2e-17 92.0 110 49.1
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 5.4e-17 91.3 87 55.2
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 5.4e-17 91.3 127 48.8
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 7.0e-17 90.9 134 42.5
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 7.0e-17 90.9 87 56.3
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 9.2e-17 90.5 81 61.7
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.6e-16 89.7 85 61.2
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.7e-16 89.0 87 57.5
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 3.5e-16 88.6 84 58.3
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 4.6e-16 88.2 81 58.0
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 7.8e-16 87.4 93 53.8
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.7e-15 86.3 105 51.4
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 1.7e-15 86.3 135 41.5
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 2.3e-15 85.9 111 45.0
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.0e-15 85.5 132 40.2
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 3.0e-15 85.5 133 42.9
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.0e-15 85.5 128 41.4
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 6.6e-15 84.3 134 43.3
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 8.6e-15 84.0 114 44.7
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.1e-14 83.6 129 43.4
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.5e-14 83.2 122 45.1
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 2.5e-14 82.4 137 40.9
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.3e-14 82.0 137 38.0
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.3e-14 82.0 137 38.0
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 4.3e-14 81.6 119 42.9
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 5.6e-14 81.3 78 60.3
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 7.3e-14 80.9 111 47.7
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 9.5e-14 80.5 136 40.4
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.2e-13 80.1 97 49.5
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.1e-13 79.3 88 52.3
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 2.1e-13 79.3 136 40.4
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 2.1e-13 79.3 133 41.4
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 2.1e-13 79.3 158 39.2
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 2.8e-13 79.0 84 57.1
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.6e-13 78.6 88 52.3
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 3.6e-13 78.6 106 47.2
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 4.7e-13 78.2 92 52.2
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 4.7e-13 78.2 135 38.5
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 4.7e-13 78.2 119 41.2
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 6.2e-13 77.8 112 41.1
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 8.1e-13 77.4 108 46.3
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.1e-12 77.0 119 42.9
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.4e-12 76.6 88 50.0
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-12 76.3 92 52.2
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-12 76.3 92 52.2
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-12 76.3 92 52.2
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-12 76.3 92 52.2
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.8e-12 76.3 92 52.2
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.8e-12 76.3 92 52.2
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 1.8e-12 76.3 94 48.9
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.8e-12 76.3 98 51.0
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 2.3e-12 75.9 88 48.9
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 2.3e-12 75.9 88 48.9
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 2.3e-12 75.9 112 39.3
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 2.3e-12 75.9 119 42.0
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 3.1e-12 75.5 108 44.4
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.1e-12 75.5 111 40.5
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.1e-12 75.5 75 54.7
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 4.0e-12 75.1 116 43.1
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.0e-12 75.1 131 36.6
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 6.8e-12 74.3 89 47.2
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 8.9e-12 73.9 88 47.7
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-11 73.6 88 47.7
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-11 73.6 88 48.9
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-11 73.6 88 48.9
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.2e-11 73.6 88 48.9
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.0e-11 72.8 89 51.7
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 2.0e-11 72.8 111 41.4
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.0e-11 72.8 81 49.4
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 2.6e-11 72.4 111 39.6
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 2.6e-11 72.4 111 41.4
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 3.4e-11 72.0 120 41.7
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 4.4e-11 71.6 89 47.2
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 4.4e-11 71.6 120 37.5
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 4.4e-11 71.6 103 44.7
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 5.8e-11 71.2 120 39.2
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 7.5e-11 70.9 131 36.6
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 7.5e-11 70.9 112 45.5
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 1.3e-10 70.1 84 48.8
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 2.2e-10 69.3 89 46.1
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 2.2e-10 69.3 116 39.7
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 3.7e-10 68.6 101 42.6
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 3.7e-10 68.6 108 44.4
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 8.3e-10 67.4 83 50.6
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 7.1e-09 64.3 89 42.7
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 7.1e-09 64.3 108 42.6
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 1.2e-08 63.5 122 40.2
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.6e-08 63.2 89 41.6
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 1.6e-08 63.2 123 33.3
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 7.8e-08 60.8 89 43.8
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.3e-07 60.1 126 33.3
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 1.7e-07 59.7 82 43.9
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 1.7e-07 59.7 82 43.9
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 1.7e-07 59.7 82 43.9
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.7e-07 59.7 88 45.5
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 3.0e-07 58.9 113 37.2
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 5.1e-07 58.2 82 42.7
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 5.1e-07 58.2 82 42.7
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 6.6e-07 57.8 122 34.4
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 6.6e-07 57.8 132 34.8
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 6.6e-07 57.8 114 35.1
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 1.1e-06 57.0 124 37.1
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.1e-06 57.0 118 36.4
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.5e-06 56.6 130 32.3
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.5e-06 55.8 121 33.1
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 3.3e-06 55.5 134 33.6
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.3e-06 55.5 111 35.1
Glyma.03G204600 Glycine max HOM05D005113 ORTHO05D006045 5.6e-06 54.7 113 32.7
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 5.6e-06 54.7 117 32.5
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 7.3e-06 54.3 75 44.0
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 7.3e-06 54.3 89 42.7
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 7.3e-06 54.3 43 65.1


User provided reference genes

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