Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.4e-240 835.9 425 100.0
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.1e-232 809.7 425 97.4
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 7.4e-165 584.3 431 71.2
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 9.6e-165 583.9 423 70.7
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 5.5e-160 568.2 413 72.4
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 1.9e-157 559.7 400 72.8
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 2.5e-157 559.3 424 68.2
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 5.7e-157 558.1 427 67.4
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 5.3e-155 551.6 425 68.2
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 5.3e-155 551.6 427 67.9
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 2.0e-154 549.7 420 69.5
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 8.8e-150 534.3 362 74.6
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 1.7e-148 530.0 371 72.8
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.7e-148 530.0 410 68.5
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 2.8e-148 529.3 427 66.5
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.2e-146 523.9 431 65.4
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 2.6e-146 522.7 354 74.0
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 3.4e-146 522.3 402 68.7
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 5.9e-146 521.5 470 59.6
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 5.9e-146 521.5 350 74.9
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 5.9e-146 521.5 362 74.0
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 7.7e-146 521.2 353 74.8
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.0e-145 520.8 389 69.2
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 6.5e-145 518.1 354 74.3
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 8.5e-145 517.7 426 64.8
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 8.5e-145 517.7 400 67.5
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 1.4e-144 516.9 354 74.6
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 1.4e-144 516.9 360 72.2
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 2.5e-144 516.2 353 73.9
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 4.2e-144 515.4 365 72.1
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 4.2e-144 515.4 361 72.6
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 5.5e-144 515.0 354 72.9
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 1.6e-143 513.5 366 70.2
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.8e-142 510.0 370 70.3
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 1.8e-142 510.0 359 70.8
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 5.1e-142 508.4 427 64.6
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 5.1e-142 508.4 354 72.3
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 6.7e-142 508.1 354 71.2
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 6.7e-142 508.1 424 63.4
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 8.8e-142 507.7 405 65.7
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.6e-141 506.1 362 71.5
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 5.7e-141 505.0 363 70.2
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.3e-140 503.8 387 66.1
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 8.2e-140 501.1 355 72.7
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.1e-139 500.7 436 60.3
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 1.8e-139 500.0 461 60.5
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.4e-139 499.6 355 70.1
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 3.1e-139 499.2 403 64.3
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 1.2e-138 497.3 364 69.2
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.2e-138 497.3 342 73.4
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.2e-138 497.3 341 72.7
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.0e-138 496.5 410 62.0
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 4.5e-138 495.4 390 66.7
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 5.9e-138 495.0 359 70.2
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.7e-137 493.4 403 63.8
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 2.9e-137 492.7 412 62.6
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 2.9e-137 492.7 355 68.5
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 2.9e-137 492.7 355 68.5
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 2.9e-137 492.7 355 69.0
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 5.0e-137 491.9 356 69.4
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 6.5e-137 491.5 351 70.9
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 8.5e-137 491.1 355 68.7
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 8.5e-137 491.1 363 69.1
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.4e-136 490.3 427 63.5
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 2.5e-136 489.6 355 68.2
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 2.5e-136 489.6 354 70.9
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 4.2e-136 488.8 382 67.8
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 1.2e-135 487.3 355 67.9
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 2.7e-135 486.1 348 70.4
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 6.1e-135 485.0 360 68.3
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 6.1e-135 485.0 363 68.9
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.0e-134 484.2 361 68.1
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 3.0e-134 482.6 361 67.9
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 3.9e-134 482.3 355 67.6
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 7.4e-133 478.0 361 67.3
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 6.3e-132 474.9 346 70.8
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.8e-131 473.4 361 67.6
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 4.1e-131 472.2 390 64.6
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 1.7e-129 466.8 363 68.9
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 2.2e-129 466.5 433 58.9
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.1e-128 464.2 359 65.7
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 4.2e-128 462.2 354 66.1
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 4.0e-126 455.7 361 65.4
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 6.7e-126 454.9 362 65.5
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 3.3e-125 452.6 357 66.7
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 7.5e-125 451.4 314 72.9
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 9.7e-125 451.1 353 65.4
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.1e-123 447.6 309 72.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 3.5e-122 442.6 316 70.3
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 6.1e-119 431.8 304 73.0
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 7.5e-117 424.9 271 74.9
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 3.1e-115 419.5 322 67.7
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 3.8e-113 412.5 321 64.5
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 6.1e-111 405.2 354 57.6
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.4e-107 394.0 397 51.6
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 6.6e-105 385.2 358 55.3
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 3.3e-96 356.3 346 52.9
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 5.2e-86 322.4 255 60.4
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 9.9e-85 318.2 265 59.2
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 9.9e-85 318.2 463 47.7
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 8.6e-81 305.1 186 83.3
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.3e-80 303.1 397 42.8
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 2.0e-77 293.9 258 63.6
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 7.8e-74 282.0 362 45.9
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 4.4e-69 266.2 180 73.9
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 1.4e-67 261.2 183 68.9
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.5e-64 250.4 423 35.7
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.5e-64 250.4 423 35.7
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 1.2e-61 241.5 254 52.0
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.5e-61 239.6 411 35.0
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 2.0e-53 214.2 343 42.0
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 2.2e-52 210.7 161 67.1
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.9e-52 210.3 517 28.2
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 2.4e-46 190.7 357 38.1
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 2.8e-39 167.2 163 50.9
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 3.6e-34 150.2 153 49.7
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.6e-18 98.2 71 66.2
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 2.3e-17 94.4 70 68.6
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 3.1e-14 84.0 68 67.6
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.1e-14 84.0 171 31.6
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.3e-14 83.2 171 31.6
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 1.2e-13 82.0 70 64.3
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.6e-13 81.6 61 55.7
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.9e-13 79.7 175 31.4
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.0e-12 76.6 169 33.7
MD15G1234700 Malus domestica HOM05D006074 ORTHO05D248841 2.1e-10 71.2 57 56.1
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 4.7e-10 70.1 51 70.6


User provided reference genes

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