Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 1.1e-286 989.2 484 100.0
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 6.0e-272 940.3 484 94.2
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.9e-272 939.9 484 93.6
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 2.3e-271 938.3 483 94.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.3e-271 938.3 484 94.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 3.9e-271 937.6 484 93.6
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 5.1e-271 937.2 484 93.8
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 5.1e-271 937.2 484 93.8
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.5e-270 935.6 484 93.6
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.9e-270 935.3 484 93.2
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 3.3e-270 934.5 484 93.0
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.3e-270 934.5 484 93.2
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.3e-270 934.1 484 91.9
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.3e-270 934.1 484 93.2
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 4.3e-270 934.1 484 93.6
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.6e-269 932.2 484 93.4
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.6e-269 932.2 484 93.2
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 2.1e-269 931.8 484 93.2
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.8e-269 931.4 484 93.2
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 4.8e-269 930.6 484 93.8
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 6.2e-269 930.2 484 92.6
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 6.2e-269 930.2 484 93.0
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 8.1e-269 929.9 484 93.4
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.4e-268 929.1 489 92.2
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.8e-268 928.7 484 92.8
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.3e-268 927.2 484 91.7
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.3e-268 927.2 484 92.4
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 6.9e-268 926.8 484 92.8
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 6.9e-268 926.8 481 93.1
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.2e-267 926.0 483 93.0
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.2e-267 926.0 484 92.8
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.2e-267 926.0 482 93.2
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 1.5e-267 925.6 483 92.8
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.6e-267 924.9 483 93.8
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.4e-267 924.5 484 91.7
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 5.8e-267 923.7 483 92.5
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 5.8e-267 923.7 483 93.2
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.0e-266 922.9 484 92.1
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.2e-266 921.8 485 92.6
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.2e-266 921.8 482 92.9
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 91.7
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 92.1
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 3.8e-266 921.0 484 91.9
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 8.4e-266 919.8 484 91.9
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 8.4e-266 919.8 484 91.3
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.1e-265 919.5 493 92.3
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.4e-265 919.1 484 92.1
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.9e-265 918.7 483 91.5
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.9e-265 918.7 484 92.4
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 4.2e-265 917.5 482 91.9
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.2e-265 917.5 484 91.9
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 4.2e-265 917.5 484 91.5
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 5.5e-265 917.1 484 92.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 5.5e-265 917.1 484 92.1
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 91.9
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 92.1
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 9.3e-265 916.4 483 91.9
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.2e-264 916.0 484 91.9
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.2e-264 916.0 484 91.7
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.6e-264 915.6 482 92.1
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.6e-264 915.6 484 91.7
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 91.9
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.7e-264 914.8 482 91.7
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.5e-264 914.4 484 91.7
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 3.5e-264 914.4 484 91.9
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.5e-264 914.4 484 91.7
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 3.5e-264 914.4 483 91.5
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 3.5e-264 914.4 483 91.1
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 3.5e-264 914.4 483 91.1
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 4.6e-264 914.1 477 92.2
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.0e-264 913.7 483 90.5
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 7.9e-264 913.3 483 90.9
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.0e-263 912.9 483 91.3
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.0e-263 912.9 474 93.2
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.0e-263 912.9 483 91.1
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 91.7
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.3e-263 912.5 486 90.9
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.8e-263 912.1 483 90.7
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.8e-263 912.1 484 91.5
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 2.3e-263 911.8 484 91.7
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.0e-263 911.4 483 90.9
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 91.9
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 91.7
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 91.6
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.5e-262 909.1 484 92.4
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.9e-262 908.7 484 90.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 7.4e-262 906.7 485 91.5
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.6e-261 905.6 485 91.3
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.1e-261 905.2 483 90.5
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 3.7e-261 904.4 484 90.7
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 6.3e-261 903.7 483 90.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 8.2e-261 903.3 483 90.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.1e-260 902.9 478 91.0
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.4e-260 902.5 484 90.5
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 4.1e-260 901.0 483 90.1
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 5.3e-260 900.6 477 91.2
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 4.5e-259 897.5 483 90.3
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 4.5e-259 897.5 460 95.0
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 7.6e-259 896.7 453 94.9
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.9e-258 894.8 483 90.3
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.8e-258 894.4 460 94.3
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 5.0e-258 894.0 485 89.7
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 5.0e-258 894.0 460 94.3
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 9.3e-257 889.8 476 90.8
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 9.3e-257 889.8 483 88.8
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.1e-256 888.6 483 88.6
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.8e-253 878.2 484 88.6
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.2e-251 872.8 457 91.9
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.1e-249 866.3 457 91.2
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.9e-248 860.1 458 90.8
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 4.4e-246 854.4 480 84.2
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.7e-245 852.4 458 90.2
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 8.2e-245 850.1 436 91.1
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 8.2e-245 850.1 493 85.8
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 5.5e-241 837.4 434 89.6
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 2.7e-240 835.1 407 96.6
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.4e-239 832.8 431 88.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.0e-239 831.6 408 95.8
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.7e-237 825.9 406 95.6
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.8e-237 824.3 405 95.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.2e-235 819.7 407 94.3
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.5e-230 802.7 433 86.6
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.4e-228 796.2 483 81.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 5.5e-225 784.3 384 96.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.8e-220 769.2 421 83.1
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.2e-219 766.5 436 82.3
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.6e-219 766.1 427 82.7
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 2.6e-214 748.8 392 92.1
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.8e-210 734.9 481 77.5
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.9e-209 732.6 390 91.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.1e-192 674.1 346 92.8
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 6.4e-189 664.5 366 87.4
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 3.6e-184 648.7 395 74.7
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.6e-182 641.0 483 69.8
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.1e-179 632.9 315 94.9
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.6e-174 614.4 484 67.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-172 610.5 483 67.3
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.4e-172 609.4 483 67.7
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 9.6e-169 597.4 332 88.9
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.2e-149 533.1 279 90.3
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.3e-143 511.9 351 73.8
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.7e-125 453.8 273 75.5
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.2e-116 422.5 203 98.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 8.0e-99 365.2 180 92.8
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.0e-97 360.5 191 89.0
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.0e-94 350.5 172 96.5
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.2e-91 341.3 171 94.2
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.6e-84 315.8 483 41.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 4.3e-76 289.7 146 93.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 3.5e-70 270.0 146 88.4
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.1e-66 256.9 161 82.0
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.3e-64 251.5 127 94.5
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.1e-63 248.4 127 88.2
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.1e-58 230.3 144 81.2
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.0e-54 216.1 259 44.4
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 3.3e-52 210.3 100 97.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.2e-51 206.1 102 95.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.1e-50 203.8 124 82.3
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.3e-35 155.2 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 2.8e-35 154.1 77 96.1
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 2.8e-35 154.1 77 96.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.4e-34 151.0 105 70.5
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 3.0e-29 134.0 69 95.7
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 6.7e-29 132.9 197 38.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.7e-29 132.5 71 90.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.7e-27 127.1 68 88.2
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-26 124.4 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-26 124.4 65 89.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.9e-26 122.9 66 89.4
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-25 121.7 66 87.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-22 110.9 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 5.1e-21 106.7 67 68.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 8.8e-21 105.9 67 73.1
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 5.0e-16 90.1 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.8e-13 81.6 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 6.7e-13 79.7 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 7.0e-10 69.7 61 59.0
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 9.4e-07 59.3 59 66.1
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 8.0e-06 56.2 38 68.4


User provided reference genes

Program Settings