Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.6e-90 334.0 210 100.0
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.4e-45 184.5 214 59.8
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.4e-44 183.7 214 59.3
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.3e-42 177.2 214 57.5
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.9e-42 175.6 214 54.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.5e-41 173.7 215 57.2
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 3.3e-41 172.6 215 54.4
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.1e-40 169.9 211 53.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.8e-40 169.5 211 52.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.7e-40 169.1 211 53.1
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 6.2e-40 168.3 208 53.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 8.1e-40 167.9 214 50.9
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.6e-38 162.9 214 50.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.8e-38 161.8 215 53.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 8.4e-37 157.9 211 51.2
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.5e-36 156.4 217 51.2
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.5e-36 156.4 212 51.9
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.2e-36 156.0 214 48.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-35 154.1 218 48.6
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.1e-35 153.3 215 49.3
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.1e-35 153.3 212 50.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.7e-35 152.9 215 49.8
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 4.6e-35 152.1 210 47.6
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.6e-35 152.1 205 48.8
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 6.0e-35 151.8 218 50.0
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 6.0e-35 151.8 215 49.8
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 6.0e-35 151.8 214 50.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 7.9e-35 151.4 210 48.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 7.9e-35 151.4 212 49.1
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.3e-34 150.6 214 47.2
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.3e-34 149.8 213 49.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-34 149.8 213 49.8
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-34 149.8 213 49.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-34 149.4 212 48.6
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-34 149.1 213 48.4
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 6.7e-34 148.3 214 49.1
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 8.7e-34 147.9 205 47.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 8.7e-34 147.9 210 47.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.1e-33 147.5 218 45.9
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.5e-33 147.1 217 48.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.9e-33 146.7 214 50.0
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 7.4e-33 144.8 220 51.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 7.4e-33 144.8 213 50.7
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 7.4e-33 144.8 209 50.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 9.6e-33 144.4 216 47.2
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-32 144.1 215 52.6
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.3e-32 144.1 212 46.7
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.6e-32 143.7 213 50.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.6e-32 143.7 219 48.9
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.8e-32 142.9 211 45.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.8e-32 142.9 215 52.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.8e-32 142.9 209 49.8
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.7e-32 142.5 213 47.9
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-32 142.5 215 53.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 6.2e-32 141.7 213 46.9
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.8e-31 140.2 216 44.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.4e-31 139.8 213 46.5
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 4.1e-31 139.0 208 52.9
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 5.3e-31 138.7 188 48.9
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 6.9e-31 138.3 212 44.8
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 9.0e-31 137.9 184 52.7
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 9.0e-31 137.9 214 47.2
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.2e-30 137.5 205 47.8
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.5e-30 137.1 218 45.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-30 136.7 197 46.2
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.6e-30 136.3 212 46.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.4e-30 136.0 188 50.5
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.4e-30 136.0 215 46.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 4.5e-30 135.6 214 45.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.0e-29 134.4 212 43.9
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.3e-29 134.0 207 52.2
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.2e-29 133.3 214 43.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 3.8e-29 132.5 188 54.8
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.8e-29 132.5 188 54.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 3.8e-29 132.5 188 54.8
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-28 131.0 217 46.5
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.9e-28 130.2 223 43.5
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.2e-28 129.4 216 44.4
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 4.2e-28 129.0 219 50.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.5e-28 128.6 215 42.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.5e-28 128.6 221 43.9
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 7.1e-28 128.3 223 46.6
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.2e-27 127.5 218 45.0
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.7e-27 126.3 213 45.5
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.7e-27 126.3 213 45.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.5e-27 125.9 216 46.8
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.5e-27 125.9 233 39.5
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.6e-27 125.6 220 44.5
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.9e-27 124.8 213 45.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 7.9e-27 124.8 218 43.1
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-26 124.0 209 45.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.9e-26 122.5 222 47.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 8.7e-26 121.3 211 40.8
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.5e-25 120.6 218 41.7
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.9e-25 120.2 82 75.6
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.5e-25 119.8 227 41.4
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.5e-25 119.8 218 43.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.5e-25 119.8 216 47.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.5e-25 119.8 178 46.6
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.3e-25 119.4 192 44.3
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.3e-25 119.0 215 42.8
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 4.3e-25 119.0 211 47.4
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.7e-25 118.6 220 40.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.7e-25 117.9 217 46.1
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 9.7e-25 117.9 211 46.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.6e-24 117.1 218 45.9
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.6e-24 117.1 216 45.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.8e-24 116.3 209 38.8
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.7e-24 115.9 218 39.0
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 6.3e-24 115.2 203 38.4
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.2e-24 114.8 197 42.1
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.1e-23 114.4 221 48.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.8e-23 113.6 199 41.2
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 6.9e-23 111.7 221 42.1
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-22 110.9 217 38.2
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-22 109.8 207 44.4
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 4.5e-22 109.0 256 37.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 7.7e-22 108.2 217 42.4
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.0e-21 107.8 229 36.7
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 5.0e-21 105.5 214 44.4
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.5e-21 104.8 201 48.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.1e-20 104.4 214 39.7
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.1e-20 104.4 214 39.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-20 104.0 204 42.2
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-20 104.0 216 40.7
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.4e-20 104.0 198 45.5
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-20 103.6 204 44.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-20 103.6 204 44.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-20 103.6 204 44.6
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.9e-20 103.6 233 41.6
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.5e-20 103.2 252 38.9
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.5e-20 103.2 171 43.9
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.6e-19 100.5 182 39.6
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-19 100.1 204 37.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.1e-19 100.1 199 46.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.1e-19 100.1 210 41.4
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.1e-19 100.1 225 44.9
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.6e-19 99.0 195 39.0
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 6.1e-19 98.6 202 45.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.0e-18 97.8 202 37.1
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.3e-18 96.7 195 44.6
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.3e-18 96.7 210 43.3
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-18 96.3 195 37.9
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 3.0e-18 96.3 195 37.9
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.0e-18 96.3 197 44.2
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 8.8e-18 94.7 195 39.0
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 8.8e-18 94.7 195 38.5
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 8.8e-18 94.7 195 38.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.1e-17 94.4 188 47.3
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.0e-17 93.6 71 66.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.3e-16 90.9 212 35.4
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.7e-16 90.5 213 42.3
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.2e-16 90.1 191 42.4
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.8e-16 89.0 76 64.5
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.4e-15 87.4 80 57.5
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.2e-14 84.3 223 34.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.2e-13 80.1 214 31.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.2e-13 80.1 89 56.2
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.8e-13 79.3 71 57.7
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 6.5e-13 78.6 169 36.7
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 8.5e-13 78.2 227 37.0
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-12 77.4 214 29.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 5.5e-12 75.5 68 61.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.1e-09 67.8 71 53.5
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.1e-09 67.8 212 32.5
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.3e-09 66.2 71 53.5
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 3.3e-09 66.2 208 30.8
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.4e-09 65.1 59 61.0
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.3e-08 64.3 43 69.8
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.3e-08 64.3 67 53.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.8e-08 62.4 192 33.9
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.1e-07 59.7 210 30.0


User provided reference genes

Program Settings