Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.8e-57 225.7 112 100.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 8.0e-18 94.0 106 52.8
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 4.0e-17 91.7 99 53.5
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 4.4e-16 88.2 106 50.0
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.7e-15 85.1 112 47.3
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.7e-15 85.1 112 48.2
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 4.8e-15 84.7 110 49.1
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.3e-15 84.3 112 47.3
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.1e-14 83.6 108 45.4
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 3.1e-14 82.0 112 46.4
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 5.3e-14 81.3 102 46.1
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.1e-14 80.5 112 46.4
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 9.1e-14 80.5 108 49.1
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 2.7e-13 79.0 109 47.7
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.3e-12 76.6 114 41.2
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 2.2e-12 75.9 104 46.2
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 3.8e-12 75.1 109 44.0
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.8e-12 75.1 107 46.7
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 5.0e-12 74.7 108 41.7
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 8.5e-12 73.9 89 48.3
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-11 73.6 107 45.8
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.5e-11 73.2 107 44.9
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.9e-11 72.8 106 44.3
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.9e-11 72.8 106 43.4
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 7.2e-11 70.9 115 47.0
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.7e-10 68.9 106 38.7
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 8.0e-10 67.4 114 39.5
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 1.4e-09 66.6 113 45.1
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 1.4e-09 66.6 113 45.1
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 3.0e-09 65.5 104 41.3
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 3.0e-09 65.5 103 39.8
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 4.0e-09 65.1 107 41.1
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 5.2e-09 64.7 104 40.4
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 5.2e-09 64.7 93 43.0
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 6.8e-09 64.3 60 55.0
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 8.8e-09 63.9 102 41.2
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 8.8e-09 63.9 95 44.2
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.2e-08 63.5 87 41.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.2e-08 63.5 102 41.2
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 2.6e-08 62.4 104 39.4
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.6e-08 62.4 108 40.7
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 3.4e-08 62.0 94 42.6
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 3.4e-08 62.0 109 39.4
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 4.4e-08 61.6 104 43.3
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 4.4e-08 61.6 114 40.4
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 5.7e-08 61.2 103 39.8
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 7.5e-08 60.8 49 59.2
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 7.5e-08 60.8 117 35.0
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 7.5e-08 60.8 110 40.9
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 7.5e-08 60.8 112 37.5
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 9.8e-08 60.5 35 77.1
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 9.8e-08 60.5 103 40.8
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.3e-07 60.1 113 38.9
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 1.3e-07 60.1 104 39.4
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 1.7e-07 59.7 101 40.6
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.7e-07 59.7 112 37.5
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 2.2e-07 59.3 101 35.6
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 2.8e-07 58.9 112 38.4
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 3.7e-07 58.5 112 42.9
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.7e-07 58.5 108 38.0
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 4.8e-07 58.2 111 37.8
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 6.3e-07 57.8 109 38.5
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 8.3e-07 57.4 110 38.2
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 8.3e-07 57.4 108 38.0
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 1.1e-06 57.0 39 69.2
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.1e-06 57.0 111 38.7
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.1e-06 57.0 112 37.5
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 1.4e-06 56.6 103 36.9
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 1.4e-06 56.6 103 36.9
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.4e-06 56.6 111 37.8
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 1.4e-06 56.6 30 86.7
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.8e-06 56.2 41 61.0
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 1.8e-06 56.2 38 68.4
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 2.4e-06 55.8 96 39.6
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.4e-06 55.8 64 45.3
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.4e-06 55.8 107 38.3
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 3.1e-06 55.5 32 78.1
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 3.1e-06 55.5 45 57.8
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 3.1e-06 55.5 112 41.1
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 4.1e-06 55.1 109 36.7
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 4.1e-06 55.1 103 36.9
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 4.1e-06 55.1 66 47.0
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 4.1e-06 55.1 64 45.3
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 4.1e-06 55.1 30 80.0
C07p37510 Brassica napus HOM05D009946 ORTHO05D004401 5.4e-06 54.7 62 45.2
BolC7t44264H Brassica oleracea HOM05D009946 ORTHO05D004401 5.4e-06 54.7 62 45.2
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 5.4e-06 54.7 64 45.3
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 5.4e-06 54.7 100 39.0
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 7.0e-06 54.3 54 53.7
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 7.0e-06 54.3 103 35.9
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 7.0e-06 54.3 60 53.3
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 7.0e-06 54.3 115 36.5
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 9.1e-06 53.9 73 43.8
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 9.1e-06 53.9 62 43.5


User provided reference genes

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