Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 3.2e-74 281.6 134 100.0
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 1.1e-69 266.5 130 96.9
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.4e-69 266.2 130 95.4
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.4e-69 266.2 130 95.4
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.4e-69 265.4 130 96.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.1e-69 264.6 130 94.6
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.1e-69 264.6 130 94.6
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-68 263.1 130 94.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.6e-68 261.9 126 96.8
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 4.5e-68 261.2 126 96.8
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 5.9e-68 260.8 126 96.8
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.0e-67 260.0 130 92.3
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-67 260.0 130 92.3
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-67 260.0 130 92.3
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.3e-67 259.6 126 96.0
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.3e-67 259.6 126 96.0
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.7e-67 259.2 128 94.5
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 2.2e-67 258.8 126 96.0
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 2.2e-67 258.8 126 96.8
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.9e-67 258.5 126 96.0
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.9e-67 258.5 130 91.5
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 3.8e-67 258.1 126 96.0
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 3.8e-67 258.1 126 96.0
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.0e-67 257.7 126 94.4
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.0e-67 257.7 126 94.4
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 5.0e-67 257.7 126 94.4
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.0e-67 257.7 126 94.4
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 5.0e-67 257.7 126 95.2
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 6.5e-67 257.3 126 94.4
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 6.5e-67 257.3 126 94.4
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 6.5e-67 257.3 126 94.4
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 8.5e-67 256.9 126 94.4
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 94.4
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.1e-66 256.5 126 94.4
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.5e-66 256.1 126 94.4
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.5e-66 256.1 124 96.0
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.5e-66 256.1 124 96.0
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.5e-66 256.1 126 95.2
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.9e-66 255.8 126 94.4
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.9e-66 255.8 126 92.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.9e-66 255.8 126 93.7
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 2.5e-66 255.4 126 94.4
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.2e-66 254.6 126 93.7
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 7.2e-66 253.8 126 93.7
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 7.2e-66 253.8 126 93.7
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 9.4e-66 253.4 126 94.4
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.4e-66 253.4 126 93.7
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 9.4e-66 253.4 126 93.7
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 9.4e-66 253.4 126 94.4
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 94.4
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.6e-65 252.7 126 93.7
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 1.6e-65 252.7 130 90.8
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.7e-65 251.9 126 92.9
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 2.7e-65 251.9 126 92.1
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 2.7e-65 251.9 126 92.1
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.6e-65 251.5 126 91.3
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 3.6e-65 251.5 126 92.1
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.6e-65 251.5 126 91.3
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.6e-65 251.5 126 92.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 4.7e-65 251.1 126 90.5
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 6.1e-65 250.8 126 92.9
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 6.1e-65 250.8 125 91.2
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.1e-65 250.8 126 92.9
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 8.0e-65 250.4 127 90.6
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 8.0e-65 250.4 124 93.5
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.8e-64 249.2 124 92.7
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 2.3e-64 248.8 129 89.1
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.3e-64 248.8 126 92.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-64 248.4 126 91.3
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.0e-64 248.4 126 91.3
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 4.0e-64 248.1 126 90.5
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.2e-64 247.7 126 90.5
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 8.8e-64 246.9 126 91.3
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 8.8e-64 246.9 126 91.3
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 8.8e-64 246.9 126 91.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 89.7
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 91.3
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.5e-63 246.1 126 90.5
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.6e-63 245.4 124 91.1
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.6e-63 245.4 124 91.1
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.3e-63 245.0 124 91.1
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 4.4e-63 244.6 126 90.5
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 9.7e-63 243.4 126 89.7
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.3e-62 243.0 126 89.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.3e-62 243.0 126 88.9
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.7e-62 242.7 126 89.7
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.7e-62 242.7 126 89.7
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.7e-62 242.7 126 88.1
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.2e-62 242.3 128 90.6
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.8e-62 241.9 124 91.1
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.8e-62 241.9 124 91.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 2.8e-62 241.9 124 89.5
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.8e-62 241.9 124 91.1
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.7e-62 241.5 124 89.5
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 3.7e-62 241.5 128 85.9
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 8.2e-62 240.4 126 88.1
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.1e-61 240.0 128 85.9
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.8e-61 239.2 124 89.5
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.8e-61 239.2 124 89.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 3.1e-61 238.4 124 89.5
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 4.1e-61 238.0 151 77.5
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 4.1e-61 238.0 124 89.5
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 4.1e-61 238.0 124 89.5
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 4.1e-61 238.0 124 89.5
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 4.1e-61 238.0 124 89.5
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 4.1e-61 238.0 124 89.5
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 4.1e-61 238.0 126 87.3
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 4.1e-61 238.0 126 87.3
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 5.3e-61 237.7 124 89.5
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.0e-60 235.7 134 82.8
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.0e-60 235.7 124 87.1
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.6e-60 235.3 157 74.5
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 4.5e-60 234.6 112 95.5
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 4.5e-60 234.6 125 86.4
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 5.9e-60 234.2 123 88.6
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 5.9e-60 234.2 130 84.6
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 7.7e-60 233.8 119 91.6
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 7.7e-60 233.8 119 91.6
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 7.7e-60 233.8 119 91.6
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-59 233.0 124 87.9
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 5.0e-59 231.1 124 87.9
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.5e-58 229.6 171 67.3
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.1e-57 225.7 120 85.8
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 2.1e-57 225.7 130 82.3
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.4e-56 223.0 126 80.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.8e-56 222.6 138 76.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.0e-56 221.9 126 80.2
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 2.0e-55 219.2 124 84.7
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 9.8e-55 216.9 126 77.0
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 1.3e-54 216.5 114 87.7
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.3e-54 216.5 112 90.2
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.2e-54 215.7 109 89.9
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.7e-54 214.9 114 86.0
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.4e-53 213.0 126 74.6
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.5e-52 208.4 108 89.8
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.4e-50 200.3 149 68.5
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 1.1e-45 186.8 124 76.6
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.9e-44 181.0 100 87.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 1.7e-43 179.5 94 86.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.5e-42 176.4 87 92.0
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 7.2e-42 174.1 82 96.3
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 9.5e-42 173.7 86 93.0
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 3.6e-41 171.8 82 96.3
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 6.1e-41 171.0 140 65.0
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.3e-40 169.1 82 95.1
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.0e-39 166.0 182 50.5
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 2.0e-39 166.0 82 92.7
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 5.7e-39 164.5 126 65.9
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 7.5e-39 164.1 83 91.6
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.3e-38 163.3 77 94.8
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 4.9e-38 161.4 82 89.0
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 7.0e-37 157.5 78 93.6
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 7.0e-37 157.5 110 70.9
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.1e-34 150.2 78 89.7
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 1.2e-33 146.7 78 88.5
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.4e-32 143.3 118 59.3
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.4e-32 143.3 124 57.3
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 3.4e-31 138.7 64 98.4
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 9.8e-31 137.1 73 86.3
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.4e-29 133.3 75 84.0
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 5.6e-26 121.3 123 55.3
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 5.6e-26 121.3 123 55.3
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 7.3e-26 120.9 58 93.1
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 2.6e-23 112.5 58 91.4
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 7.1e-21 104.4 57 86.0
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 5.2e-16 88.2 44 93.2
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 4.9e-06 55.1 69 42.0


User provided reference genes

Program Settings