Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 2.0e-62 242.3 124 100.0
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.4e-47 193.0 123 78.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.4e-47 193.0 123 78.0
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 5.3e-47 191.0 123 75.6
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 6.9e-47 190.7 122 73.0
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 6.9e-47 190.7 122 73.0
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 9.0e-47 190.3 123 74.8
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 1.5e-46 189.5 123 74.8
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 1.5e-46 189.5 119 79.0
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 2.0e-46 189.1 123 74.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 2.6e-46 188.7 122 74.6
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.9e-45 185.3 123 74.0
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 5.0e-45 184.5 119 76.5
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 8.5e-45 183.7 122 72.1
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 1.1e-44 183.3 118 76.3
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 1.1e-44 183.3 123 71.5
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 4.2e-44 181.4 123 74.0
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 9.4e-44 180.3 123 69.1
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 1.2e-43 179.9 124 68.5
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 1.6e-43 179.5 123 72.4
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 1.6e-43 179.5 119 74.8
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 2.7e-43 178.7 123 70.7
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 2.7e-43 178.7 123 71.5
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 2.7e-43 178.7 123 69.1
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 4.6e-43 177.9 120 73.3
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 6.1e-43 177.6 123 70.7
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 7.9e-43 177.2 118 72.0
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 7.9e-43 177.2 123 70.7
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.4e-42 176.4 118 71.2
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 1.8e-42 176.0 118 70.3
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 1.8e-42 176.0 123 69.1
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 2.3e-42 175.6 122 67.2
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 2.3e-42 175.6 117 71.8
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 6.7e-42 174.1 123 69.1
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 6.7e-42 174.1 123 66.7
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 8.8e-42 173.7 122 68.9
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 1.1e-41 173.3 123 71.5
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 1.1e-41 173.3 123 67.5
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.1e-41 173.3 119 73.1
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.1e-41 173.3 119 73.1
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 1.5e-41 172.9 123 67.5
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.5e-41 172.2 119 73.1
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 2.5e-41 172.2 123 69.9
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 2.5e-41 172.2 119 71.4
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 4.3e-41 171.4 123 65.9
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 9.7e-41 170.2 123 66.7
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 9.7e-41 170.2 117 69.2
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 1.3e-40 169.9 130 67.7
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.3e-40 169.9 136 64.7
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 1.3e-40 169.9 123 64.2
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 1.7e-40 169.5 123 68.3
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 2.2e-40 169.1 123 65.9
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.7e-40 168.3 117 72.6
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 4.8e-40 167.9 123 68.3
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 4.8e-40 167.9 123 68.3
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 4.8e-40 167.9 122 68.0
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 8.2e-40 167.2 123 66.7
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 8.2e-40 167.2 123 66.7
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 8.2e-40 167.2 123 66.7
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 8.2e-40 167.2 105 77.1
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 8.2e-40 167.2 123 67.5
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 1.1e-39 166.8 120 69.2
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 1.4e-39 166.4 123 68.3
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 1.4e-39 166.4 123 66.7
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 1.4e-39 166.4 119 69.7
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 1.4e-39 166.4 119 68.9
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 1.8e-39 166.0 122 65.6
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 1.8e-39 166.0 121 65.3
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 2.4e-39 165.6 123 66.7
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 3.1e-39 165.2 118 66.1
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 4.1e-39 164.9 117 65.8
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 4.1e-39 164.9 120 68.3
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 4.1e-39 164.9 124 66.1
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 4.1e-39 164.9 105 77.1
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 6.9e-39 164.1 105 72.4
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 9.1e-39 163.7 123 65.9
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 9.1e-39 163.7 123 65.9
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 9.1e-39 163.7 123 65.9
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 1.2e-38 163.3 123 65.9
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.2e-38 163.3 145 59.3
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 1.5e-38 162.9 123 67.5
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.6e-38 162.2 123 65.9
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.6e-38 162.2 123 65.9
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.6e-38 162.2 123 65.9
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 4.5e-38 161.4 121 62.8
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 1.7e-37 159.5 117 64.1
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 2.9e-37 158.7 122 61.5
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 3.8e-37 158.3 143 58.7
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 6.5e-37 157.5 112 71.4
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 8.5e-37 157.1 118 65.3
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 8.5e-37 157.1 117 65.8
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 1.1e-36 156.8 137 59.9
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 2.5e-36 155.6 123 61.0
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.2e-35 153.3 106 71.7
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.8e-34 149.4 101 71.3
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 8.8e-34 147.1 113 61.9
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.1e-33 146.7 123 61.8
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 3.3e-33 145.2 101 71.3
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 9.7e-33 143.7 116 59.5
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.2e-32 142.5 134 56.0
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 2.8e-32 142.1 101 70.3
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 6.3e-32 141.0 114 59.6
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 3.1e-31 138.7 133 52.6
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 7.0e-31 137.5 136 55.1
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 3.5e-30 135.2 101 61.4
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 4.5e-30 134.8 215 40.5
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 5.9e-30 134.4 119 53.8
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.0e-29 133.7 107 60.7
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 2.9e-29 132.1 122 57.4
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 6.5e-29 131.0 125 53.6
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 3.2e-28 128.6 88 69.3
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 3.6e-27 125.2 103 59.2
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 2.3e-26 122.5 88 68.2
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 1.3e-24 116.7 81 69.1
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 1.1e-23 113.6 121 47.9
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 1.8e-23 112.8 68 79.4
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 1.2e-22 110.2 73 74.0
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 2.0e-22 109.4 77 66.2
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 4.5e-22 108.2 73 68.5
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.1e-20 103.6 121 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.5e-20 102.4 89 51.7
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 5.2e-18 94.7 74 59.5
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 5.2e-18 94.7 95 53.7
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 8.8e-18 94.0 88 59.1
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.8e-16 89.0 70 61.4
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 9.1e-15 84.0 59 69.5
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 1.0e-10 70.5 50 66.0
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 4.4e-09 65.1 61 49.2
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 9.8e-09 63.9 114 37.7


User provided reference genes

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