Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.3e-157 558.9 296 100.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.7e-107 393.3 303 67.7
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.4e-106 389.4 286 68.5
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 7.1e-106 387.9 287 68.3
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 9.2e-106 387.5 256 73.8
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.6e-105 386.7 286 67.8
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 7.8e-105 384.4 286 67.8
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.3e-104 383.6 243 79.4
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.3e-104 382.9 291 66.7
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 3.0e-104 382.5 267 70.0
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 5.1e-104 381.7 252 73.0
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.6e-104 381.3 244 76.2
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.1e-103 380.6 252 72.6
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 3.3e-103 379.0 297 65.0
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 4.3e-103 378.6 263 70.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 5.6e-103 378.3 239 76.2
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 7.3e-103 377.9 294 66.3
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.6e-102 376.7 288 66.3
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 2.1e-102 376.3 289 66.8
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.6e-102 375.6 289 66.8
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 6.2e-102 374.8 286 67.1
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.2e-102 374.8 286 68.5
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 8.1e-102 374.4 226 77.9
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.3e-101 372.9 293 65.5
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.3e-101 372.9 284 66.2
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 3.1e-101 372.5 287 69.0
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 4.0e-101 372.1 249 72.3
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.2e-101 371.7 291 65.3
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.9e-101 370.9 287 68.6
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.0e-100 369.8 289 65.7
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 2.6e-100 369.4 240 75.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.6e-100 369.4 296 64.5
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 3.4e-100 369.0 286 65.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 4.4e-100 368.6 289 65.4
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 5.8e-100 368.2 296 63.9
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.7e-99 366.7 226 76.5
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 4.9e-99 365.2 240 71.7
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 6.4e-99 364.8 303 62.4
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 6.4e-99 364.8 226 76.5
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 8.4e-99 364.4 255 71.4
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.4e-98 363.6 288 66.3
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.4e-98 363.6 231 75.3
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.4e-98 363.6 231 75.3
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 2.4e-98 362.8 256 69.5
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 3.2e-98 362.5 290 64.1
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 5.4e-98 361.7 226 76.1
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 7.1e-98 361.3 269 65.8
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.2e-97 360.5 237 72.6
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.6e-97 360.1 262 70.6
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.7e-97 359.4 290 63.4
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 4.6e-97 358.6 291 63.2
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.0e-96 357.5 249 69.1
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.3e-96 356.3 288 63.9
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 6.6e-96 354.8 255 69.0
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.5e-95 353.6 237 70.9
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 7.3e-95 351.3 263 68.4
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 9.6e-95 350.9 284 62.3
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 2.8e-94 349.4 237 70.5
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.8e-94 349.4 263 66.2
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 2.8e-94 349.4 286 62.9
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 3.6e-94 349.0 237 70.5
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 3.6e-94 349.0 289 64.0
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 4.7e-94 348.6 251 68.1
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 6.2e-94 348.2 289 62.6
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 1.1e-93 347.4 252 66.7
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 3.1e-93 345.9 286 61.5
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 4.0e-93 345.5 263 67.7
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 6.9e-93 344.7 251 66.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.5e-92 343.6 263 65.0
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.0e-92 343.2 257 68.1
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.0e-92 343.2 296 59.8
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 3.4e-92 342.4 290 59.0
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 4.4e-92 342.0 239 68.6
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.3e-91 340.5 274 63.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.7e-91 340.1 251 66.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 2.9e-91 339.3 290 60.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 4.9e-91 338.6 307 59.6
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.1e-90 337.4 297 59.3
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.9e-90 336.7 292 60.6
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 2.4e-90 336.3 296 57.4
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.6e-89 333.6 246 64.6
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.6e-89 333.6 237 66.2
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.7e-89 332.8 292 59.9
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 3.5e-89 332.4 293 58.0
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.0e-88 330.9 284 63.0
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 8.7e-88 327.8 284 59.2
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 4.3e-87 325.5 245 67.3
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 7.3e-87 324.7 286 57.3
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.8e-86 322.8 310 55.2
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 4.9e-83 312.0 250 62.4
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.6e-81 307.0 206 70.9
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.3e-80 303.1 228 66.7
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 3.9e-80 302.4 251 60.6
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.1e-79 300.8 252 60.3
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.5e-79 300.4 253 60.9
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 3.3e-79 299.3 257 57.6
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 9.6e-79 297.7 187 77.5
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 9.6e-79 297.7 188 77.1
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.1e-78 296.6 246 60.2
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 8.1e-78 294.7 226 62.8
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 3.1e-77 292.7 235 59.6
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.2e-76 290.8 283 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.5e-76 290.4 258 57.0
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 7.6e-76 288.1 306 50.7
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 2.9e-75 286.2 252 54.8
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 8.4e-75 284.6 287 55.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.1e-74 284.3 207 67.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.2e-73 280.8 233 59.2
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.2e-73 280.8 226 61.9
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 7.9e-73 278.1 180 75.0
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.4e-69 267.3 184 70.1
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.3e-67 260.8 160 76.9
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.2e-66 255.8 251 57.4
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.8e-64 250.4 193 65.8
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.1e-58 231.1 238 50.8
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 3.6e-49 199.5 265 41.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 4.8e-46 189.1 314 37.9
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.4e-45 186.8 290 43.4
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 3.1e-45 186.4 121 68.6
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 4.5e-44 182.6 144 59.7
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.7e-41 173.3 295 37.3
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 6.7e-40 168.7 121 66.9
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 6.3e-38 162.2 118 66.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.3e-35 154.5 132 60.6
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 8.0e-33 145.2 116 61.2
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 8.2e-30 135.2 176 47.7
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.5e-26 124.4 71 80.3
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.5e-26 122.5 262 31.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 3.4e-23 113.2 82 65.9
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 8.3e-22 108.6 82 64.6
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 1.0e-19 101.7 86 59.3
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.1e-17 94.0 82 57.3
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 3.0e-16 90.1 56 73.2
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 7.8e-12 75.5 91 46.2


User provided reference genes

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