Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 8.4e-182 640.2 316 100.0
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 3.2e-149 531.9 316 82.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.5e-146 523.1 317 81.7
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 9.7e-146 520.4 313 80.5
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.1e-144 516.9 316 79.1
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.8e-144 516.2 316 80.4
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.8e-144 516.2 315 79.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.4e-144 515.8 316 80.1
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-143 513.5 316 79.4
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-143 513.5 316 79.4
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 2.0e-143 512.7 314 79.6
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 2.6e-143 512.3 316 79.4
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 3.5e-143 511.9 316 80.4
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.5e-143 511.5 316 79.4
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 7.7e-143 510.8 317 78.9
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.0e-142 510.4 316 80.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 3.8e-142 508.4 316 79.1
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.8e-142 508.4 314 79.3
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.0e-142 508.1 316 78.2
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 6.5e-142 507.7 314 78.3
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 1.5e-141 506.5 314 79.0
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.5e-141 505.8 316 78.5
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 5.5e-141 504.6 316 78.8
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 5.5e-141 504.6 318 79.2
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.2e-141 504.2 318 78.3
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 9.4e-141 503.8 311 79.4
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.7e-140 502.3 317 78.2
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-140 501.9 314 78.7
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.6e-140 501.9 316 78.8
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 8.0e-140 500.7 316 81.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-139 500.0 314 78.0
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.8e-139 499.6 315 78.4
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.3e-139 499.2 313 79.2
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 5.2e-139 498.0 325 76.3
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 6.8e-139 497.7 314 78.3
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 8.8e-139 497.3 312 79.2
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.6e-138 495.7 309 78.0
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 3.4e-138 495.4 316 76.6
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 7.5e-138 494.2 316 76.3
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.7e-137 493.0 316 78.5
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-137 492.7 316 77.2
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.2e-137 492.7 316 77.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.8e-137 492.3 316 76.6
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 8.3e-137 490.7 314 75.8
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-136 490.3 312 76.0
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-136 490.3 312 75.6
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.4e-136 490.0 316 75.9
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.4e-136 490.0 318 74.2
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 3.1e-136 488.8 319 74.6
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-136 488.8 316 76.6
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 3.1e-136 488.8 312 76.6
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 5.3e-136 488.0 319 74.3
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 5.3e-136 488.0 316 76.6
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 5.3e-136 488.0 314 76.4
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 5.3e-136 488.0 313 76.4
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 7.0e-136 487.6 314 74.5
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 9.1e-136 487.3 324 74.4
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-135 486.5 310 76.8
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.6e-135 486.5 312 76.9
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 2.0e-135 486.1 320 74.4
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 2.0e-135 486.1 318 76.4
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.0e-135 486.1 316 76.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.7e-135 485.7 314 74.2
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 3.5e-135 485.3 316 77.2
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 3.5e-135 485.3 312 75.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 3.5e-135 485.3 335 74.3
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 4.5e-135 485.0 315 76.2
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 4.5e-135 485.0 313 75.4
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 5.9e-135 484.6 314 77.1
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 7.7e-135 484.2 310 77.1
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.0e-134 483.8 316 75.0
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.7e-134 483.0 319 73.4
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.2e-134 482.6 313 75.7
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.9e-134 482.3 313 75.7
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.5e-133 479.9 316 75.6
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.5e-133 479.9 314 74.8
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.5e-133 479.2 317 76.0
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 3.2e-133 478.8 318 77.7
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 5.5e-133 478.0 313 75.1
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 7.2e-133 477.6 314 74.5
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 7.2e-133 477.6 313 75.4
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 5.2e-131 471.5 313 75.1
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 6.8e-131 471.1 286 80.1
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 8.8e-131 470.7 306 75.2
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-130 470.3 324 71.9
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.5e-130 469.9 334 70.4
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 2.0e-130 469.5 314 73.6
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.4e-130 468.8 315 73.0
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.4e-130 468.4 313 73.5
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.3e-129 466.8 324 71.3
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.7e-129 466.5 315 72.4
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.8e-129 465.7 313 74.1
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 3.7e-129 465.3 324 71.3
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.3e-129 464.5 317 71.6
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 3.1e-128 462.2 328 70.1
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 3.1e-128 462.2 314 74.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.1e-128 462.2 303 74.9
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 4.5e-127 458.4 316 73.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 5.0e-126 454.9 286 76.6
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.6e-126 454.1 276 81.2
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 8.0e-124 447.6 317 70.7
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 8.9e-123 444.1 337 68.2
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-122 443.4 272 80.1
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 5.7e-122 441.4 314 71.0
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 2.9e-118 429.1 324 67.0
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.6e-116 422.2 322 65.2
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 4.7e-116 421.8 267 75.3
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 5.8e-114 414.8 317 65.0
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 5.8e-114 414.8 327 64.2
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 3.7e-113 412.1 312 67.3
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.2e-112 409.1 310 66.8
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.1e-109 400.6 223 86.1
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 9.8e-106 387.5 316 64.9
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.6e-103 380.2 316 65.2
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 4.6e-103 378.6 332 59.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 6.0e-103 378.3 309 63.1
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 7.3e-101 371.3 229 75.1
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.1e-99 365.9 224 76.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.9e-99 364.4 306 64.7
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.2e-98 364.0 341 55.4
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.2e-98 364.0 306 64.4
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-90 337.4 204 80.9
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 6.4e-89 331.6 226 73.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.5e-85 320.5 236 66.5
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 3.3e-85 319.3 325 55.4
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 2.4e-80 303.1 215 72.1
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 9.6e-77 291.2 165 84.2
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.6e-76 289.3 312 51.9
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.0e-74 283.5 271 55.4
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 7.1e-72 275.0 156 85.3
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.1e-67 261.2 347 43.8
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 2.0e-66 256.9 171 76.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.3e-65 254.2 150 82.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.3e-62 243.4 175 71.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.9e-59 231.9 169 67.5
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-58 229.9 134 80.6
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-50 204.5 121 80.2
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-50 203.8 112 85.7
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 2.6e-50 203.4 247 44.5
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.8e-49 199.5 121 77.7
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.0e-49 199.1 121 77.7
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.0e-49 199.1 121 77.7
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-48 197.6 121 77.7
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-48 197.2 121 76.9
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.9e-48 197.2 131 72.5
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 3.2e-48 196.4 246 47.2
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.2e-48 196.4 121 76.9
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.2e-48 196.4 116 80.2
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.6e-47 194.1 115 80.0
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-47 193.0 121 74.4
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-45 186.8 299 44.1
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-44 181.8 161 59.6
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 2.5e-40 170.2 102 77.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.5e-40 170.2 102 78.4
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.5e-40 169.1 93 87.1
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.5e-32 142.5 84 76.2
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 3.6e-31 139.8 96 69.8
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.6e-31 139.8 140 54.3
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 3.5e-26 123.2 95 61.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 3.5e-26 123.2 95 61.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-22 110.2 64 84.4
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.8e-22 109.0 64 84.4
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.8e-19 100.9 252 30.2
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.4e-19 100.5 74 73.0
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.1e-19 100.1 111 50.5
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-18 98.2 97 57.7
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-18 97.4 97 57.7
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-18 97.1 97 56.7
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.0e-17 95.1 83 60.2
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 8.5e-17 92.0 49 83.7
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 8.5e-17 92.0 49 83.7
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.9e-16 90.9 47 83.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-16 90.5 49 81.6
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.5e-16 90.5 49 81.6
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 4.7e-15 86.3 62 62.9
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.6e-13 80.5 85 52.9
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 2.7e-10 70.5 153 34.6
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 5.9e-10 69.3 71 59.2
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 1.7e-09 67.8 89 46.1


User provided reference genes

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