Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 9.1e-259 896.3 443 100.0
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 4.6e-218 761.1 442 84.8
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 6.6e-217 757.3 442 83.3
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 6.6e-217 757.3 440 84.3
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 5.8e-213 744.2 439 82.5
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.7e-210 735.3 440 81.1
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.3e-209 733.0 441 80.3
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.3e-209 733.0 441 80.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 3.0e-209 731.9 439 80.0
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.9e-209 731.5 440 81.4
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 5.1e-209 731.1 440 81.6
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 6.6e-209 730.7 442 81.0
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.9e-208 729.2 440 80.2
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 4.3e-208 728.0 440 80.7
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 4.3e-208 728.0 442 80.3
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.3e-207 726.5 437 79.6
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.6e-207 726.1 436 79.1
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 2.1e-207 725.7 440 80.0
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.8e-207 724.5 440 80.7
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.1e-206 723.4 439 78.4
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.4e-206 723.0 436 80.3
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.8e-206 722.6 442 79.9
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 2.4e-206 722.2 436 81.4
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 2.4e-206 722.2 440 79.8
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.3e-206 721.1 436 80.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 9.0e-206 720.3 438 79.5
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.2e-205 719.9 440 79.8
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 1.2e-205 719.9 439 79.5
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 4.5e-205 718.0 439 78.1
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 9.9e-205 716.8 442 79.0
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 2.2e-204 715.7 440 79.8
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.1e-203 713.4 438 77.9
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 1.4e-203 713.0 438 78.5
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.9e-203 712.6 441 78.9
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.9e-203 712.6 436 78.7
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 4.2e-203 711.4 437 79.2
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 5.4e-203 711.1 439 78.4
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 9.3e-203 710.3 438 78.1
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.2e-202 709.9 439 78.1
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 2.7e-202 708.8 439 77.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.5e-202 708.4 449 77.3
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 6.0e-202 707.6 441 78.2
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 6.0e-202 707.6 438 78.1
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.3e-201 706.4 439 77.9
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.8e-201 706.1 436 76.8
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 2.3e-201 705.7 431 78.2
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.3e-201 705.7 442 78.7
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 3.9e-201 704.9 427 79.4
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 5.1e-201 704.5 441 77.8
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 5.1e-201 704.5 431 78.4
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 9.6e-200 700.3 441 77.3
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-199 699.9 439 78.1
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.8e-199 698.7 432 78.2
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 3.7e-199 698.4 437 76.9
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 4.8e-199 698.0 440 75.2
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 4.8e-199 698.0 436 77.1
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 8.1e-199 697.2 430 77.7
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.1e-198 696.8 427 78.0
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 3.1e-198 695.3 438 76.9
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 4.0e-198 694.9 436 75.9
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.2e-197 693.3 438 75.6
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.2e-197 693.3 422 79.9
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.5e-197 693.0 440 76.8
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 3.4e-197 691.8 446 75.1
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 4.5e-197 691.4 453 75.1
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 5.8e-197 691.0 440 76.1
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 7.6e-197 690.6 431 76.6
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 9.9e-197 690.3 438 77.4
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 8.4e-196 687.2 428 78.3
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-195 686.8 465 74.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.1e-195 686.8 449 76.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.9e-195 686.0 439 74.7
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 4.2e-195 684.9 396 83.6
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 6.0e-194 681.0 421 79.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.0e-193 680.2 430 76.7
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.6e-191 672.9 438 75.3
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 1.6e-191 672.9 418 76.3
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.8e-191 672.2 442 75.3
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.1e-190 670.2 416 76.9
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 6.9e-190 667.5 417 75.5
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 6.9e-190 667.5 423 76.1
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 6.9e-190 667.5 421 77.2
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 6.9e-190 667.5 438 74.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.3e-188 663.3 431 74.0
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.3e-184 648.7 454 72.5
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.4e-181 638.6 425 74.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 4.5e-181 638.3 426 70.7
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.0e-180 637.1 429 70.6
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 2.1e-178 629.4 472 68.0
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.9e-177 625.2 408 74.5
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 3.3e-176 622.1 498 64.7
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 4.3e-176 621.7 445 69.7
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.4e-174 616.7 434 67.1
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.9e-174 614.4 440 66.6
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 3.1e-166 589.0 479 60.8
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 1.0e-164 583.9 470 63.6
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.0e-164 583.9 364 78.8
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 5.5e-163 578.2 421 69.1
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 2.1e-162 576.2 536 57.8
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 3.6e-162 575.5 393 71.5
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 8.0e-162 574.3 354 79.7
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.8e-161 573.2 440 66.4
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 9.1e-158 560.8 375 70.9
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.2e-153 545.0 438 59.1
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 6.8e-153 544.7 443 60.0
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.4e-152 542.3 436 63.5
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 4.1e-150 535.4 438 58.9
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 3.8e-148 528.9 424 61.6
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.1e-147 527.3 467 59.3
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.5e-144 516.9 431 57.5
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.0e-144 516.5 421 62.7
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 5.0e-132 475.3 435 54.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 6.0e-125 451.8 269 79.6
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.0e-124 451.1 410 54.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 4.3e-115 419.1 246 79.3
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 7.8e-101 371.7 244 76.6
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 6.4e-95 352.1 195 85.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 8.4e-95 351.7 279 64.2
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.6e-93 347.4 194 81.4
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 4.6e-93 345.9 382 44.0
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 6.0e-93 345.5 450 42.0
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 6.9e-89 332.0 504 38.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 4.5e-88 329.3 247 69.2
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 5.0e-63 246.1 169 70.4
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 9.1e-57 225.3 200 60.0
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.1e-51 208.4 169 60.4
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 4.1e-49 199.9 184 56.5
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 3.5e-48 196.8 246 45.5
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 8.5e-47 192.2 420 31.7
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 5.5e-46 189.5 141 64.5
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 6.7e-44 182.6 195 51.3
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 6.7e-44 182.6 152 59.9
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 4.4e-43 179.9 112 70.5
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 7.7e-40 169.1 95 80.0
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.0e-36 157.1 132 56.8
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 5.2e-36 156.4 145 55.9
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 2.4e-33 147.5 96 69.8
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 2.7e-32 144.1 86 73.3
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 5.9e-32 142.9 125 58.4
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 3.6e-29 133.7 106 64.2
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.8e-26 124.0 126 53.2
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 2.7e-24 117.5 126 50.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.6e-19 100.9 93 53.8
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 2.2e-18 97.8 66 68.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.4e-17 95.1 67 73.1
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 2.1e-13 81.3 65 67.7
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.7e-13 80.1 190 32.6
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.4e-11 73.9 70 58.6
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.2e-10 71.2 82 48.8
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 3.2e-09 67.4 55 60.0
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 3.2e-09 67.4 55 60.0
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 3.2e-09 67.4 51 62.7
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 7.0e-09 66.2 53 60.4


User provided reference genes

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