Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 4.1e-188 661.4 367 100.0
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.1e-153 547.0 332 81.3
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.5e-153 545.8 366 79.0
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.3e-153 545.4 332 80.1
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 5.6e-153 544.7 338 80.2
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.6e-153 544.7 338 80.2
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.2e-152 543.5 338 79.6
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.6e-152 543.1 332 80.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 3.1e-151 538.9 338 79.6
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 6.8e-151 537.7 332 80.4
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 8.9e-151 537.3 332 80.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-150 537.0 332 79.8
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-149 533.5 332 79.8
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-149 532.7 324 81.5
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 8.4e-149 530.8 324 80.2
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 8.4e-149 530.8 328 79.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 4.1e-148 528.5 332 78.6
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 5.4e-148 528.1 318 80.8
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 7.1e-148 527.7 319 81.5
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 9.2e-148 527.3 323 80.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.6e-147 526.6 323 79.6
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-147 526.2 323 80.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.0e-146 523.9 331 78.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.0e-146 523.9 320 80.9
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.7e-146 523.1 337 77.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.0e-146 522.3 330 79.4
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.9e-146 521.9 336 77.1
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 6.6e-146 521.2 331 78.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 6.6e-146 521.2 326 77.9
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-145 520.4 328 78.0
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.5e-145 520.0 335 77.3
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.9e-145 519.6 335 75.8
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.9e-145 519.6 322 81.4
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 4.3e-145 518.5 323 80.8
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.7e-144 515.0 321 80.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.7e-144 515.0 322 79.8
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 4.7e-144 515.0 332 76.8
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.2e-144 514.6 326 77.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.2e-144 514.6 326 77.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 6.2e-144 514.6 326 77.6
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.4e-143 513.5 326 77.6
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.4e-143 513.5 326 77.6
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.8e-143 513.1 334 76.0
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.0e-143 511.9 322 78.0
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-142 510.4 326 76.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-142 510.4 326 76.4
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.0e-142 509.6 339 76.1
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 4.4e-142 508.4 330 74.8
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 7.6e-142 507.7 315 79.4
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.3e-141 506.9 326 77.0
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.3e-141 506.9 290 86.2
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.7e-141 506.5 327 77.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.2e-141 506.1 335 75.8
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.9e-141 505.8 323 76.2
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.9e-141 505.8 364 71.4
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 8.4e-141 504.2 295 82.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 8.4e-141 504.2 313 78.0
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.1e-140 503.8 314 78.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.4e-140 503.4 315 76.5
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.4e-140 503.4 328 75.9
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.4e-140 502.7 314 78.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.4e-140 502.7 324 77.2
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.4e-140 502.7 314 78.3
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.4e-140 502.7 314 78.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 3.2e-140 502.3 324 77.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 4.2e-140 501.9 295 82.0
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 4.2e-140 501.9 329 75.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.4e-140 501.5 311 78.1
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 5.4e-140 501.5 327 74.9
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.6e-139 500.0 295 81.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 2.1e-139 499.6 308 78.2
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.1e-139 499.6 311 76.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 3.5e-139 498.8 327 74.3
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 3.5e-139 498.8 323 75.9
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 4.6e-139 498.4 295 81.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 4.6e-139 498.4 327 75.2
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 6.0e-139 498.0 328 74.4
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 6.0e-139 498.0 307 79.5
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 5.1e-138 495.0 327 75.2
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-137 493.8 322 76.1
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-137 493.8 322 76.1
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 1.1e-137 493.8 322 76.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.1e-137 493.8 329 75.1
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.1e-137 493.8 316 76.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.3e-137 492.3 333 73.3
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 5.6e-137 491.5 328 73.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.3e-136 490.3 326 73.9
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.8e-136 489.2 337 70.9
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 4.8e-136 488.4 327 73.1
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.8e-136 488.4 330 73.6
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 6.2e-136 488.0 308 76.3
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 3.1e-135 485.7 323 73.7
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.9e-133 479.2 309 75.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.4e-133 478.0 313 76.7
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 4.2e-132 475.3 306 75.5
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.0e-130 470.7 304 77.3
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.3e-130 470.3 296 77.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 3.9e-130 468.8 308 76.6
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-130 468.4 319 73.7
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.1e-130 468.4 309 74.1
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 2.5e-129 466.1 338 69.8
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.6e-128 463.4 321 71.0
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 8.1e-128 461.1 308 72.1
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.1e-127 460.7 322 72.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.0e-127 457.6 335 71.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.8e-126 454.9 349 66.2
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 9.9e-126 454.1 313 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.3e-125 453.8 315 69.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.8e-125 452.2 278 80.9
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.4e-124 449.5 314 71.0
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 3.2e-124 449.1 309 72.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.2e-123 447.2 326 70.2
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.3e-120 437.2 295 72.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.4e-119 433.7 336 67.3
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 5.3e-119 431.8 373 60.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 7.6e-118 427.9 271 77.5
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.3e-117 427.2 260 82.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 8.4e-117 424.5 334 67.1
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 3.2e-116 422.5 286 75.2
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.5e-113 413.7 292 72.6
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.9e-109 399.4 317 64.0
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.9e-109 399.4 317 64.0
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.2e-108 395.6 313 64.5
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.2e-107 394.0 234 83.8
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 3.6e-107 392.5 324 63.0
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.8e-106 390.2 275 71.6
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.7e-106 388.3 322 64.9
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 4.3e-105 385.6 241 76.8
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.4e-103 379.8 242 76.4
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.9e-101 372.9 301 64.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-89 334.3 198 79.3
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.0e-85 321.2 201 75.1
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.6e-83 312.8 228 71.5
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.2e-82 308.9 201 71.6
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 8.2e-80 301.6 325 51.4
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.8e-74 283.9 197 73.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.8e-72 276.6 259 59.8
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.8e-66 257.3 181 72.9
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.8e-61 239.6 136 78.7
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.7e-59 232.6 164 73.2
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-41 174.5 118 72.9
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.5e-41 172.2 133 63.9
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-37 160.6 110 70.0
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-34 151.8 117 75.2
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.6e-33 145.6 97 67.0
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.1e-31 139.8 123 61.0
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.1e-30 137.5 82 73.2
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.0e-29 133.7 88 71.6
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.5e-28 130.6 115 62.6
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 6.2e-27 125.9 267 30.0
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-26 123.6 117 54.7
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.4e-25 119.8 88 71.6
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.8e-24 116.7 86 65.1
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.3e-19 101.7 79 70.9
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-17 94.0 59 67.8
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.5e-17 93.2 70 58.6
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.7e-16 91.3 75 57.3
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 4.2e-15 86.7 73 65.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 6.7e-13 79.3 52 65.4


User provided reference genes

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