Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.9e-285 984.6 505 100.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.3e-123 447.6 511 50.9
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.6e-119 432.2 511 49.9
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 2.2e-115 420.2 513 48.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.3e-112 410.2 533 48.2
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 6.0e-105 385.6 513 45.6
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 5.1e-104 382.5 511 46.8
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 4.0e-101 372.9 512 45.1
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.5e-100 370.9 511 45.8
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 7.6e-100 368.6 658 39.8
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.6e-100 368.6 511 43.6
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 2.9e-99 366.7 526 43.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.8e-99 366.3 511 43.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 3.9e-96 356.3 456 47.4
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.1e-93 348.2 509 42.2
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 3.4e-92 343.2 455 44.6
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.4e-90 337.8 641 37.6
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.6e-89 334.3 641 38.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.0e-88 331.6 641 38.4
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 8.7e-88 328.6 630 38.3
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 5.6e-87 325.9 506 41.5
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 6.2e-86 322.4 517 41.6
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.1e-86 322.0 641 37.6
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 9.0e-85 318.5 431 45.9
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.0e-84 317.4 641 37.3
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.6e-84 317.0 641 37.3
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.5e-84 316.2 509 41.8
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.5e-84 316.2 462 45.5
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 7.6e-84 315.5 510 42.0
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 8.4e-83 312.0 531 41.2
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 5.4e-82 309.3 512 39.8
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 9.3e-82 308.5 522 40.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-79 301.2 512 41.8
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 5.8e-76 289.3 510 39.2
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 8.4e-75 285.4 597 33.8
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 4.2e-74 283.1 525 37.1
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 6.0e-73 279.3 511 37.4
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 6.0e-73 279.3 482 39.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 3.3e-71 273.5 390 44.6
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-70 270.8 610 33.3
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.2e-68 265.0 490 39.8
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.6e-68 263.8 390 41.5
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 4.5e-68 263.1 423 41.8
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.7e-67 261.2 581 33.0
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.9e-67 259.6 398 44.2
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.1e-66 258.5 582 33.2
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.4e-66 258.1 585 32.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.5e-66 257.3 392 41.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 3.2e-66 256.9 522 37.2
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 3.2e-66 256.9 500 38.0
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.1e-66 255.8 629 32.4
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.1e-63 248.4 539 34.9
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 3.7e-62 243.4 387 42.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 8.2e-62 242.3 435 37.5
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.8e-61 241.1 589 31.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.3e-61 239.6 514 36.8
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 9.0e-61 238.8 514 36.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.9e-60 236.1 473 34.5
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 5.0e-59 233.0 235 51.9
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.9e-58 231.1 285 49.8
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 3.2e-58 230.3 587 30.7
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 5.5e-58 229.6 391 37.3
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 9.3e-58 228.8 312 47.1
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 3.3e-55 220.3 400 38.0
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 5.7e-55 219.5 574 32.2
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 9.7e-55 218.8 409 37.7
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.7e-54 216.9 693 29.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 8.2e-54 215.7 587 31.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 2.4e-53 214.2 533 34.0
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 9.1e-53 212.2 373 39.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 3.4e-52 210.3 525 33.9
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 4.5e-52 209.9 307 45.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 2.9e-51 207.2 682 29.2
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 5.5e-50 203.0 667 28.5
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.1e-49 199.5 521 32.8
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 5.1e-48 196.4 469 33.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 8.8e-48 195.7 374 37.2
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.8e-48 195.7 610 30.2
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.3e-47 193.7 393 34.1
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.6e-44 184.1 473 34.9
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.0e-43 182.2 701 27.4
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.3e-43 181.8 673 28.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-43 181.4 399 35.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.9e-43 180.6 244 39.8
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 5.0e-43 179.9 719 27.3
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.5e-43 179.5 273 41.0
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.1e-42 178.7 673 28.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-42 178.7 689 27.4
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.9e-42 177.9 699 28.6
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.9e-42 177.9 289 42.6
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.9e-42 177.9 612 29.1
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.1e-41 174.5 706 26.6
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.7e-41 174.1 222 45.0
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.7e-41 174.1 696 27.3
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 3.6e-41 173.7 229 42.8
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.2e-40 169.9 727 27.1
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 6.7e-40 169.5 710 25.8
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.1e-39 168.7 223 43.9
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.0e-39 167.9 705 27.4
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.0e-39 167.9 706 26.6
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.7e-38 164.9 728 26.9
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.6e-36 157.5 401 32.2
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.6e-36 157.5 395 34.2
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 3.5e-36 157.1 706 26.5
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 3.8e-35 153.7 436 32.8
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 8.5e-35 152.5 382 33.2
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 8.5e-35 152.5 759 25.8
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 8.5e-35 152.5 254 36.6
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-30 138.7 722 25.8
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.0e-28 131.3 109 55.0
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 2.7e-28 131.0 388 28.4
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 5.9e-28 129.8 147 44.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.5e-26 123.2 247 36.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.1e-25 121.3 284 36.3
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.7e-22 111.7 521 26.3
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.8e-22 110.2 521 26.1
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.3e-22 109.8 311 34.4
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 9.1e-21 105.9 354 28.5
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 2.7e-20 104.4 172 41.9
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-20 103.6 366 30.1
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.5e-20 103.6 366 30.1
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 5.5e-18 96.7 286 32.9
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 8.0e-17 92.8 105 49.5
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 2.3e-16 91.3 250 30.8
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 7.0e-13 79.7 108 44.4
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 4.3e-10 70.5 496 22.4
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.3e-10 70.5 274 29.6
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 5.6e-10 70.1 95 38.9
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 9.5e-10 69.3 274 29.6
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 4.9e-06 57.0 109 37.6
HPP92_018527 Vanilla planifolia HOM05D005385 ORTHO05D006768 6.4e-06 56.6 92 34.8


User provided reference genes

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