Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 0.0e+00 1312.0 650 100.0
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.1e-281 973.0 650 73.1
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 2.1e-267 925.6 658 69.8
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 4.6e-267 924.5 644 71.4
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 1.5e-265 919.5 649 69.5
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 8.1e-264 913.7 650 69.8
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.8e-263 912.5 648 69.6
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.4e-262 908.3 622 70.6
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.3e-261 906.4 657 68.6
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 2.9e-261 905.2 648 69.9
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.9e-260 902.5 656 67.8
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 2.4e-260 902.1 653 68.9
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 5.4e-260 901.0 651 67.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 7.1e-260 900.6 648 69.8
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 3.5e-259 898.3 648 69.6
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 4.6e-259 897.9 655 68.5
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 6.0e-259 897.5 656 66.8
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.1e-257 893.3 651 69.1
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.1e-255 886.7 643 67.7
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.8e-255 885.9 706 64.7
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 5.3e-255 884.4 668 65.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 4.2e-252 874.8 656 67.2
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 2.5e-249 865.5 649 66.6
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 5.6e-249 864.4 652 66.0
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 5.6e-249 864.4 649 65.6
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 7.4e-249 864.0 650 67.7
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 2.8e-248 862.1 656 66.9
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 3.7e-248 861.7 652 66.9
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.1e-247 860.1 646 65.2
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.5e-246 856.3 657 67.1
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.0e-246 855.9 646 65.8
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 2.2e-245 852.4 650 66.8
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 3.2e-244 848.6 651 66.1
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 4.2e-244 848.2 646 65.2
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 9.3e-244 847.0 645 67.3
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 3.0e-242 842.0 656 66.0
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 5.1e-242 841.3 649 64.7
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 5.1e-242 841.3 651 65.4
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 6.7e-242 840.9 650 65.4
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 6.7e-242 840.9 646 64.7
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.7e-241 837.8 684 61.3
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 2.8e-240 835.5 642 64.0
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 2.4e-239 832.4 650 65.1
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 5.3e-239 831.2 648 62.8
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 4.5e-238 828.2 650 62.3
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.0e-237 827.0 643 63.1
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.9e-237 825.5 732 57.1
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.9e-237 825.5 641 64.3
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.4e-236 823.2 650 62.0
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 1.4e-236 823.2 643 63.0
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 1.9e-236 822.8 650 64.0
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 1.9e-236 822.8 644 64.4
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 3.2e-236 822.0 653 62.5
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 9.4e-236 820.5 643 63.8
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 6.1e-235 817.8 644 64.3
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 3.9e-234 815.1 643 63.9
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 5.7e-233 811.2 646 62.7
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 6.3e-232 807.7 652 63.2
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 6.3e-232 807.7 655 62.0
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 3.1e-231 805.4 652 62.9
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 4.1e-231 805.1 649 62.1
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.5e-230 803.1 659 60.2
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 2.2e-229 799.3 647 61.8
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 9.4e-228 793.9 684 58.8
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.6e-227 793.1 654 61.0
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 4.7e-227 791.6 649 59.5
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 1.8e-226 789.6 697 60.1
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 5.1e-226 788.1 666 59.6
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.5e-225 786.6 662 58.9
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.7e-224 783.1 667 59.1
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 2.2e-224 782.7 669 58.9
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 2.8e-224 782.3 669 58.3
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.3e-221 773.5 661 60.2
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 5.0e-221 771.5 658 59.6
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.0e-221 771.5 661 60.2
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.9e-220 769.6 661 59.8
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 3.2e-220 768.8 661 59.8
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 3.7e-216 755.4 652 59.5
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.7e-213 746.5 513 71.0
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 1.1e-212 743.8 538 70.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 4.0e-210 735.3 668 59.4
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.2e-209 733.8 645 58.9
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.3e-208 730.3 651 58.5
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 9.1e-199 697.6 654 56.9
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 3.8e-197 692.2 654 55.0
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 3.6e-195 685.6 460 73.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 4.4e-193 678.7 655 55.7
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.8e-189 665.6 509 64.4
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 3.5e-182 642.5 647 53.6
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.4e-175 620.5 642 51.9
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.6e-174 617.1 515 61.2
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.8e-170 603.6 499 62.9
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 7.5e-169 598.2 655 48.7
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 3.5e-150 536.2 620 47.3
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 2.8e-147 526.6 391 66.5
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 2.6e-145 520.0 640 46.4
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 1.2e-121 441.4 647 38.6
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 2.6e-121 440.3 398 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.0e-104 385.2 631 36.9
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.2e-99 367.5 240 73.8
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.7e-80 304.7 457 38.7
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.5e-73 280.4 532 35.5
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 7.8e-73 279.3 614 34.9
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.7e-48 198.4 230 45.7
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-44 185.3 174 51.7
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.4e-43 179.9 142 62.7
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.1e-40 170.2 227 41.4
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 2.6e-36 157.9 98 74.5
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.6e-36 157.9 405 29.6
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 2.5e-31 141.4 87 75.9
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 2.4e-29 134.8 92 67.4
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 1.9e-26 125.2 157 47.1
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 2.7e-25 121.3 111 49.5
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.0e-24 119.4 98 63.3
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.6e-17 95.5 74 68.9
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.3e-14 85.9 74 59.5
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 4.8e-14 84.0 70 60.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 6.3e-14 83.6 70 58.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 2.0e-12 78.6 76 56.6


User provided reference genes

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