Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0671 Cannabis sativa HOM05D000326 ORTHO05D003748 2.5e-62 241.9 120 100.0
CANSAT56G0433 Cannabis sativa HOM05D000326 ORTHO05D003748 2.2e-29 132.5 136 57.4
CANSAT56G0281 Cannabis sativa HOM05D000326 ORTHO05D003748 5.3e-28 127.9 136 55.9
CANSAT56G1453 Cannabis sativa HOM05D000326 ORTHO05D003748 1.0e-26 123.6 136 53.7
CSS0023135 Camellia sinensis var. sinensis HOM05D000326 ORTHO05D003748 2.2e-18 95.9 133 44.4
COL.COLO4_31858 Corchorus olitorius HOM05D000326 ORTHO05D003748 3.8e-18 95.1 133 42.9
PGR004G1603 Punica granatum HOM05D000326 ORTHO05D003748 3.8e-18 95.1 133 44.4
CAN.G1263.7 Capsicum annuum HOM05D000326 ORTHO05D003748 5.0e-18 94.7 133 42.1
Ah.14g087770 Amaranthus hybridus HOM05D000326 ORTHO05D003748 1.9e-17 92.8 133 41.4
Medtr4g132850 Medicago truncatula HOM05D000326 ORTHO05D003748 1.9e-17 92.8 132 42.4
Sabra11G0013700 Salix brachista HOM05D000182 ORTHO05D003748 1.9e-17 92.8 136 41.2
AUR62021878 Chenopodium quinoa HOM05D000326 ORTHO05D003748 2.5e-17 92.4 137 43.8
Nitab4.5_0000574g0280 Nicotiana tabacum HOM05D000326 ORTHO05D003748 2.5e-17 92.4 133 42.1
Peaxi162Scf00990g00125 Petunia axillaris HOM05D000182 ORTHO05D003748 2.5e-17 92.4 133 40.6
vmacro23325 Vaccinium macrocarpon HOM05D000326 ORTHO05D003748 2.5e-17 92.4 133 42.1
Atru.chr1.2493 Acer truncatum HOM05D000326 ORTHO05D003748 3.2e-17 92.0 133 42.1
CANSAT56G0392 Cannabis sativa HOM05D000182 ORTHO05D003748 3.2e-17 92.0 133 41.4
Sed0028075 Sechium edule HOM05D000326 ORTHO05D003748 3.2e-17 92.0 132 42.4
ClCG01G009940 Citrullus lanatus HOM05D000326 ORTHO05D003748 4.2e-17 91.7 133 41.4
Dinv07384 Davidia involucrata HOM05D000326 ORTHO05D003748 4.2e-17 91.7 133 42.1
Gohir.A05G173700 Gossypium hirsutum HOM05D000326 ORTHO05D003748 4.2e-17 91.7 133 43.6
Gorai.009G182100 Gossypium raimondii HOM05D000326 ORTHO05D003748 4.2e-17 91.7 133 43.6
Hma1.2p1_0660F.1_g197520 Hydrangea macrophylla HOM05D000326 ORTHO05D003748 5.5e-17 91.3 133 42.1
Lj1A1238T58 Lonicera japonica HOM05D000326 ORTHO05D003748 5.5e-17 91.3 133 42.9
Rhsim02G0104500 Rhododendron simsii HOM05D000326 ORTHO05D003748 5.5e-17 91.3 128 44.5
arahy.Tifrunner.gnm1.ann1.5KTK5R Arachis hypogaea HOM05D000182 ORTHO05D003748 7.2e-17 90.9 133 41.4
arahy.Tifrunner.gnm1.ann1.C9QTWM Arachis hypogaea HOM05D000182 ORTHO05D003748 7.2e-17 90.9 133 41.4
Gohir.A10G010100 Gossypium hirsutum HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 40.6
Gohir.D10G009800 Gossypium hirsutum HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 40.6
Gorai.011G010700 Gossypium raimondii HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 40.6
Lsat_1_v5_gn_7_14601 Lactuca sativa HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 42.1
Oeu007162.2 Olea europaea HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 40.6
Peaxi162Scf00442g00526 Petunia axillaris HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 40.6
Psat4g003600 Pisum sativum HOM05D000326 ORTHO05D003748 7.2e-17 90.9 132 41.7
QL03p008385 Quercus lobata HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 41.4
QL05p069860 Quercus lobata HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 41.4
QL10p003421 Quercus lobata HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 41.4
Rhsim02G0104400 Rhododendron simsii HOM05D000326 ORTHO05D003748 7.2e-17 90.9 133 42.9
FAN25G3275 Fragaria x ananassa HOM05D000326 ORTHO05D003748 9.4e-17 90.5 133 42.1
Nitab4.5_0008006g0010 Nicotiana tabacum HOM05D000182 ORTHO05D003748 9.4e-17 90.5 133 40.6
Aqoxy1G04159 Aquilegia oxysepala HOM05D000326 ORTHO05D003748 1.2e-16 90.1 132 41.7
FvH4_3g01160 Fragaria vesca HOM05D000326 ORTHO05D003748 1.2e-16 90.1 133 42.1
HanXRQChr10g0282041 Helianthus annuus HOM05D000326 ORTHO05D003748 1.2e-16 90.1 128 42.2
Thecc.06G231100 Theobroma cacao HOM05D000326 ORTHO05D003748 1.2e-16 90.1 136 41.9
Lj6g0028133 Lotus japonicus HOM05D000182 ORTHO05D003748 1.6e-16 89.7 133 42.1
MD05G1355800 Malus domestica HOM05D000326 ORTHO05D003748 1.6e-16 89.7 133 41.4
vmacro15785 Vaccinium macrocarpon HOM05D000326 ORTHO05D003748 1.6e-16 89.7 134 41.0
C03p84080 Brassica napus HOM05D000326 ORTHO05D003748 2.1e-16 89.4 136 42.6
CAN.G1186.14 Capsicum annuum HOM05D000182 ORTHO05D003748 2.1e-16 89.4 133 40.6
MELO3C021704.2 Cucumis melo HOM05D000326 ORTHO05D003748 2.1e-16 89.4 133 40.6
Glyma.09G008900 Glycine max HOM05D000182 ORTHO05D003748 2.1e-16 89.4 133 42.1
Glyma.15G113300 Glycine max HOM05D000182 ORTHO05D003748 2.1e-16 89.4 133 42.1
Oeu002754.1 Olea europaea HOM05D000326 ORTHO05D003748 2.1e-16 89.4 128 43.0
RcHm_v2.0_Chr5g0001721 Rosa chinensis HOM05D000326 ORTHO05D003748 2.1e-16 89.4 133 41.4
A08p15630 Brassica napus HOM05D000326 ORTHO05D003748 2.7e-16 89.0 132 43.2
BraA08t33543Z Brassica rapa HOM05D000326 ORTHO05D003748 2.7e-16 89.0 132 43.2
Cpa.g.sc75.123 Carica papaya HOM05D000182 ORTHO05D003748 2.7e-16 89.0 125 41.6
CiPaw.10G076300 Carya illinoinensis HOM05D000182 ORTHO05D003748 2.7e-16 89.0 132 40.9
Ciclev10016358m.g Citrus clementina HOM05D000326 ORTHO05D003748 2.7e-16 89.0 132 42.4
DCAR_002211 Daucus carota HOM05D000326 ORTHO05D003748 2.7e-16 89.0 133 40.6
Sc17g0007650 Simmondsia chinensis HOM05D000326 ORTHO05D003748 2.7e-16 89.0 133 43.6
Cc09_g01030 Coffea canephora HOM05D000326 ORTHO05D003748 3.6e-16 88.6 133 41.4
MD10G1329100 Malus domestica HOM05D000326 ORTHO05D003748 3.6e-16 88.6 133 40.6
Manes.09G026500 Manihot esculenta HOM05D000326 ORTHO05D003748 3.6e-16 88.6 133 42.1
PSO017G5127 Papaver somniferum HOM05D000326 ORTHO05D003748 3.6e-16 88.6 132 41.7
PSO675G4503 Papaver somniferum HOM05D000326 ORTHO05D003748 3.6e-16 88.6 132 41.7
TPR.G37042 Trifolium pratense HOM05D000326 ORTHO05D003748 3.6e-16 88.6 133 39.8
TAR624G0942 Trochodendron aralioides HOM05D000326 ORTHO05D003748 3.6e-16 88.6 133 42.1
BolC3t20687H Brassica oleracea HOM05D000326 ORTHO05D003748 4.7e-16 88.2 135 43.0
CsaV3_1G045840 Cucumis sativus L. HOM05D000326 ORTHO05D003748 4.7e-16 88.2 133 39.8
Gohir.D05G176700 Gossypium hirsutum HOM05D000326 ORTHO05D003748 4.7e-16 88.2 133 42.1
Prupe.4G012900 Prunus persica HOM05D000326 ORTHO05D003748 4.7e-16 88.2 133 40.6
QL03p008407 Quercus lobata HOM05D000326 ORTHO05D003748 4.7e-16 88.2 132 39.4
QL05p069871 Quercus lobata HOM05D000326 ORTHO05D003748 4.7e-16 88.2 133 40.6
Thecc.06G231000 Theobroma cacao HOM05D000326 ORTHO05D003748 4.7e-16 88.2 132 43.2
BcaC01g00769 Brassica carinata HOM05D000326 ORTHO05D003748 6.1e-16 87.8 136 41.9
Cpa.g.sc75.124 Carica papaya HOM05D000326 ORTHO05D003748 6.1e-16 87.8 133 39.1
Duzib192G0921 Durio zibethinus HOM05D000326 ORTHO05D003748 6.1e-16 87.8 128 42.2
Nitab4.5_0000143g0480 Nicotiana tabacum HOM05D000182 ORTHO05D003748 6.1e-16 87.8 133 41.4
arahy.Tifrunner.gnm1.ann1.1L9BHC Arachis hypogaea HOM05D000326 ORTHO05D003748 8.0e-16 87.4 132 40.9
arahy.Tifrunner.gnm1.ann1.GK2FLE Arachis hypogaea HOM05D000326 ORTHO05D003748 8.0e-16 87.4 132 40.9
CDE04G1138 Ceratophyllum demersum HOM05D000326 ORTHO05D003748 8.0e-16 87.4 132 41.7
Ca_21053_v3 Cicer arietinum L. HOM05D000326 ORTHO05D003748 8.0e-16 87.4 127 40.9
SalBow1G6431 Salvia bowleyana HOM05D000326 ORTHO05D003748 8.0e-16 87.4 133 41.4
Hund23413 Selenicereus undatus HOM05D000326 ORTHO05D003748 8.0e-16 87.4 133 40.6
Sopen04g006770 Solanum pennellii HOM05D000326 ORTHO05D003748 8.0e-16 87.4 133 39.1
PGSC0003DMG400013266 Solanum tuberosum HOM05D000182 ORTHO05D003748 8.0e-16 87.4 133 39.8
ATR1128G081 Amborella trichopoda HOM05D000326 ORTHO05D003748 1.0e-15 87.0 132 39.4
Migut.H01598 Erythranthe guttata HOM05D000326 ORTHO05D003748 1.0e-15 87.0 133 39.8
Nn1g03354 Nelumbo nucifera HOM05D000326 ORTHO05D003748 1.0e-15 87.0 133 42.1
QL05p069854 Quercus lobata HOM05D000182 ORTHO05D003748 1.0e-15 87.0 132 39.4
QL10p003427 Quercus lobata HOM05D000182 ORTHO05D003748 1.0e-15 87.0 132 39.4
Cfa000128 Carpinus fangiana HOM05D000182 ORTHO05D003748 1.4e-15 86.7 133 39.8
AUR62012777 Chenopodium quinoa HOM05D000326 ORTHO05D003748 1.4e-15 86.7 136 40.4
Duzib235G0859 Durio zibethinus HOM05D000182 ORTHO05D003748 1.4e-15 86.7 133 39.8
Lj4g0020890 Lotus japonicus HOM05D000326 ORTHO05D003748 1.4e-15 86.7 132 39.4
MD05G1355400 Malus domestica HOM05D000326 ORTHO05D003748 1.4e-15 86.7 133 41.4
PSO210G3324 Papaver somniferum HOM05D000326 ORTHO05D003748 1.4e-15 86.7 131 41.2
EL10Ac8g20163 Beta vulgaris HOM05D000326 ORTHO05D003748 1.8e-15 86.3 127 40.9
Haze_06896 Corylus avellana HOM05D000182 ORTHO05D003748 1.8e-15 86.3 133 39.8
Gohir.D10G009900 Gossypium hirsutum HOM05D000326 ORTHO05D003748 1.8e-15 86.3 135 41.5
Gorai.011G010800 Gossypium raimondii HOM05D000326 ORTHO05D003748 1.8e-15 86.3 135 41.5
Lalb_Chr07g0177031 Lupinus albus HOM05D000326 ORTHO05D003748 1.8e-15 86.3 132 40.9
Peaxi162Scf00558g00111 Petunia axillaris HOM05D000326 ORTHO05D003748 1.8e-15 86.3 133 39.8
ECA248G1340 Erigeron canadensis HOM05D000326 ORTHO05D003748 2.3e-15 85.9 133 39.8
HanXRQChr01g0006611 Helianthus annuus HOM05D000326 ORTHO05D003748 2.3e-15 85.9 133 40.6
Solyc04g014670.3 Solanum lycopersicum HOM05D000326 ORTHO05D003748 2.3e-15 85.9 133 38.3
Cc04_g03920 Coffea canephora HOM05D000326 ORTHO05D003748 3.0e-15 85.5 136 39.7
FAN21G2425 Fragaria x ananassa HOM05D000326 ORTHO05D003748 3.0e-15 85.5 140 39.3
HanXRQChr15g0470861 Helianthus annuus HOM05D000326 ORTHO05D003748 3.0e-15 85.5 133 38.3
Phvul.006G144400 Phaseolus vulgaris HOM05D000182 ORTHO05D003748 3.0e-15 85.5 133 41.4
Gohir.A10G010200 Gossypium hirsutum HOM05D000326 ORTHO05D003748 4.0e-15 85.1 135 41.5
Nitab4.5_0001198g0220 Nicotiana tabacum HOM05D000326 ORTHO05D003748 4.0e-15 85.1 133 40.6
Phvul.003G082700 Phaseolus vulgaris HOM05D000326 ORTHO05D003748 4.0e-15 85.1 136 38.2
Sp7g20400 Schrenkiella parvula HOM05D000326 ORTHO05D003748 4.0e-15 85.1 132 40.9
TWI38G0552 Tripterygium wilfordii HOM05D000326 ORTHO05D003748 4.0e-15 85.1 133 39.8
MSTRG.14619 Avicennia marina HOM05D000326 ORTHO05D003748 5.2e-15 84.7 132 40.9
BcaB03g11725 Brassica carinata HOM05D000326 ORTHO05D003748 5.2e-15 84.7 132 41.7
Carub.0006s3199 Capsella rubella HOM05D000326 ORTHO05D003748 5.2e-15 84.7 132 38.6
Duzib235G0545 Durio zibethinus HOM05D000326 ORTHO05D003748 5.2e-15 84.7 135 40.7
Eucgr.E03957 Eucalyptus grandis HOM05D000326 ORTHO05D003748 5.2e-15 84.7 133 39.1
DCAR_004868 Daucus carota HOM05D000326 ORTHO05D003748 6.8e-15 84.3 128 41.4
Glyma.17G009400 Glycine max HOM05D000326 ORTHO05D003748 6.8e-15 84.3 132 39.4
MBI19_g29452_MAGBIO Magnolia biondii HOM05D000326 ORTHO05D003748 6.8e-15 84.3 138 39.1
Potri.011G022400 Populus trichocarpa HOM05D000326 ORTHO05D003748 6.8e-15 84.3 136 37.5
ECA248G0644 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.8e-15 84.0 133 39.1
Lsat_1_v5_gn_0_39500 Lactuca sativa HOM05D000326 ORTHO05D003748 8.8e-15 84.0 136 38.2
Sabra11G0013500 Salix brachista HOM05D000326 ORTHO05D003748 8.8e-15 84.0 128 39.1
Sabra11G0013600 Salix brachista HOM05D000326 ORTHO05D003748 8.8e-15 84.0 128 39.1
SalBow1G6402 Salvia bowleyana HOM05D000326 ORTHO05D003748 8.8e-15 84.0 133 39.8
BcaC04g21261 Brassica carinata HOM05D000326 ORTHO05D003748 1.5e-14 83.2 133 37.6
A09p26600 Brassica napus HOM05D000326 ORTHO05D003748 1.5e-14 83.2 133 37.6
C09p33720 Brassica napus HOM05D000326 ORTHO05D003748 1.5e-14 83.2 133 37.6
BolC9t56206H Brassica oleracea HOM05D000326 ORTHO05D003748 1.5e-14 83.2 133 37.6
BraA09t38233Z Brassica rapa HOM05D000326 ORTHO05D003748 1.5e-14 83.2 133 37.6
AUR62021879 Chenopodium quinoa HOM05D000326 ORTHO05D003748 1.5e-14 83.2 136 39.7
DCAR_030879 Daucus carota HOM05D000182 ORTHO05D003748 2.0e-14 82.8 132 38.6
EL10Ac8g20162 Beta vulgaris HOM05D000326 ORTHO05D003748 2.6e-14 82.4 133 39.1
Sp6g04810 Schrenkiella parvula HOM05D000326 ORTHO05D003748 2.6e-14 82.4 132 38.6
THA.LOC104813498 Tarenaya hassleriana HOM05D000326 ORTHO05D003748 2.6e-14 82.4 132 40.2
Aa31LG9G10000 Aethionema arabicum HOM05D000326 ORTHO05D003748 3.4e-14 82.0 132 37.1
CARHR253480 Cardamine hirsuta HOM05D000326 ORTHO05D003748 3.4e-14 82.0 132 37.9
BcaB01g01773 Brassica carinata HOM05D000326 ORTHO05D003748 4.4e-14 81.6 132 37.1
MBI19_g29453_MAGBIO Magnolia biondii HOM05D000326 ORTHO05D003748 4.4e-14 81.6 122 41.8
Thhalv10028901m.g Eutrema salsugineum HOM05D000326 ORTHO05D003748 5.7e-14 81.3 132 36.4
AL6G47670 Arabidopsis lyrata HOM05D000326 ORTHO05D003748 1.3e-13 80.1 132 36.4
unitig_61.g26095 Utricularia gibba HOM05D000326 ORTHO05D003748 1.3e-13 80.1 132 35.6
AT4G05530 Arabidopsis thaliana HOM05D000326 ORTHO05D003748 2.8e-13 79.0 132 36.4
Manes.16G001800 Manihot esculenta HOM05D000326 ORTHO05D003748 2.8e-13 79.0 108 44.4
COL.COLO4_31856 Corchorus olitorius HOM05D000326 ORTHO05D003748 3.7e-13 78.6 133 39.1
Os09g0133200 Oryza sativa ssp. japonica HOM05D000326 ORTHO05D003748 6.3e-13 77.8 132 37.1
Zm00001eb305490 Zea mays HOM05D000326 ORTHO05D003748 1.1e-12 77.0 132 36.4
Pp3c18_20320 Physcomitrium patens HOM05D000326 ORTHO05D003748 5.4e-12 74.7 135 35.6
Zm00001eb294750 Zea mays HOM05D000326 ORTHO05D003748 5.4e-12 74.7 131 35.9
VMungo1215G0871 Vigna mungo HOM05D000326 ORTHO05D003748 7.0e-12 74.3 165 32.7
SMO364G0844 Selaginella moellendorffii HOM05D000326 ORTHO05D003748 9.1e-12 73.9 138 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2394 Anthoceros agrestis HOM05D000326 ORTHO05D003748 1.0e-10 70.5 135 33.3
SGA_v2.0_scaffold89G27492 Striga asiatica HOM05D000326 ORTHO05D003748 3.8e-10 68.6 143 34.3
Mapoly0189s0004 Marchantia polymorpha HOM05D000326 ORTHO05D003748 5.0e-10 68.2 132 33.3
TAR626G1478 Trochodendron aralioides HOM05D000326 ORTHO05D003748 8.6e-10 67.4 167 31.7
Glyma.02G116900 Glycine max HOM05D000326 ORTHO05D003748 5.5e-09 64.7 51 62.7
AUR62012778 Chenopodium quinoa HOM05D000326 ORTHO05D003748 7.2e-09 64.3 95 45.3
HPP92_003052 Vanilla planifolia HOM05D000326 ORTHO05D003748 1.0e-07 60.5 148 31.1
Potri.011G022500 Populus trichocarpa HOM05D000326 ORTHO05D003748 1.4e-07 60.1 55 50.9
VMungo0540G1586 Vigna mungo HOM05D000182 ORTHO05D003748 3.0e-07 58.9 59 52.5
QL03p008379 Quercus lobata HOM05D000326 ORTHO05D003748 6.8e-07 57.8 55 49.1
unitig_61.g26094 Utricularia gibba HOM05D000326 ORTHO05D003748 2.0e-06 56.2 56 50.0
SEGI_32087 Sequoiadendron giganteum HOM05D000326 ORTHO05D003748 2.6e-06 55.8 66 50.0
Cre03.g191850 Chlamydomonas reinhardtii HOM05D000326 ORTHO05D003748 3.4e-06 55.5 132 28.8
arahy.Tifrunner.gnm1.ann1.H48B83 Arachis hypogaea HOM05D000326 ORTHO05D003748 5.7e-06 54.7 45 60.0
CANSAT54G1873 Cannabis sativa HOM05D002250 ORTHO05D002393 7.5e-06 54.3 62 43.5


User provided reference genes

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