Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.4e-196 688.7 374 100.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.4e-95 353.2 396 54.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.2e-89 334.3 422 49.5
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 3.5e-86 322.8 381 52.8
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.3e-85 320.1 381 52.5
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.9e-84 317.0 401 49.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 3.6e-83 312.8 381 51.7
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.8e-82 310.5 417 49.6
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.2e-81 307.8 395 49.4
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 5.8e-81 305.4 444 46.2
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 6.4e-80 302.0 419 47.0
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.2e-78 297.7 401 48.9
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.2e-78 297.7 337 54.6
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.1e-78 297.0 391 48.1
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.5e-78 296.2 410 47.3
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.0e-78 295.4 420 49.3
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 7.9e-78 295.0 383 47.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.3e-77 293.5 409 46.2
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.0e-77 293.1 394 48.7
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.0e-77 293.1 398 48.0
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 8.7e-77 291.6 412 47.1
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.1e-76 291.2 424 46.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.6e-76 288.9 411 46.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.3e-75 287.7 414 46.9
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 2.8e-75 286.6 420 48.3
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 6.2e-75 285.4 382 47.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.8e-74 283.9 410 45.4
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 5.3e-74 282.3 397 47.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 5.3e-74 282.3 384 50.3
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.9e-74 282.0 436 47.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 9.0e-74 281.6 434 43.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 9.0e-74 281.6 394 50.5
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 9.0e-74 281.6 384 50.3
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.2e-73 281.2 386 49.0
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.2e-73 281.2 381 47.5
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.3e-72 277.7 385 48.6
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.2e-72 276.9 380 49.2
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 4.9e-72 275.8 385 48.1
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 8.4e-72 275.0 207 69.1
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.4e-71 274.2 395 46.3
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 7.1e-71 271.9 408 46.8
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.2e-70 271.2 387 48.8
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.2e-70 271.2 385 48.1
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.6e-70 270.8 311 52.4
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.3e-69 267.7 431 42.9
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.8e-69 267.3 374 44.7
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 8.7e-69 265.0 376 45.7
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.1e-68 264.6 387 47.8
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.9e-68 263.8 392 45.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.5e-68 263.5 439 42.8
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.3e-68 263.1 413 43.8
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 7.4e-68 261.9 446 42.2
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 9.6e-68 261.5 423 44.4
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 9.6e-68 261.5 430 40.9
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 3.7e-67 259.6 408 43.4
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.8e-67 259.2 423 46.1
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 8.2e-67 258.5 411 45.3
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.3e-66 255.8 405 43.5
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 5.3e-66 255.8 583 36.7
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 9.0e-66 255.0 407 46.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.0e-65 253.8 206 64.1
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 4.5e-65 252.7 391 45.3
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.3e-64 251.1 393 42.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 2.9e-64 250.0 402 42.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.2e-63 246.5 388 44.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 5.5e-63 245.7 367 44.1
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 7.1e-63 245.4 370 43.0
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.6e-62 244.2 379 43.0
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.7e-62 243.4 389 44.5
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.5e-62 243.0 237 57.0
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 3.5e-62 243.0 322 45.3
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 4.6e-62 242.7 198 62.1
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.6e-62 242.7 231 55.8
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 6.0e-62 242.3 417 41.7
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.0e-62 242.3 379 42.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.8e-59 233.4 397 43.1
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.8e-58 230.7 204 61.8
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.1e-58 229.9 429 40.3
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 5.3e-58 229.2 206 61.7
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.5e-57 227.6 389 39.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.0e-56 224.9 378 41.3
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.0e-56 224.9 351 42.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 3.8e-56 223.0 496 36.3
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.4e-55 221.1 208 56.7
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.5e-55 219.2 374 44.1
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 5.5e-55 219.2 364 43.7
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.4e-55 218.4 382 42.9
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.6e-54 217.6 382 41.6
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 7.9e-54 215.3 161 65.8
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.0e-53 214.9 321 45.5
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.7e-51 206.5 212 52.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.7e-51 206.5 212 52.8
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.8e-48 196.4 382 38.0
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 6.5e-48 195.7 388 42.5
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 7.2e-47 192.2 306 43.5
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 3.6e-46 189.9 373 43.4
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 7.9e-46 188.7 373 42.9
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 7.9e-46 188.7 373 42.1
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 3.9e-45 186.4 372 42.7
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.0e-44 184.1 169 60.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.7e-43 179.9 203 51.2
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.4e-42 177.2 157 59.2
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.2e-41 174.9 130 62.3
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.9e-39 167.5 205 45.9
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 9.4e-39 165.2 371 33.7
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.8e-37 161.0 226 42.9
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 5.3e-34 149.4 322 42.5
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.9e-31 141.0 312 37.8
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 4.2e-31 139.8 128 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.7e-30 137.1 151 46.4
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.8e-29 134.4 223 37.2
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 4.0e-29 133.3 374 31.8
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.0e-28 131.0 358 34.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.7e-28 129.4 248 38.7
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 3.7e-27 126.7 349 34.7
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 9.1e-26 122.1 107 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.5e-25 119.8 127 46.5
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.2e-23 113.2 262 36.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 2.1e-22 110.9 89 59.6
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 6.1e-22 109.4 81 67.9
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 8.8e-21 105.5 70 70.0
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.7e-19 100.1 250 34.0
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 5.9e-17 92.8 255 34.1
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 3.8e-16 90.1 105 48.6
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 5.0e-16 89.7 303 33.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 5.0e-16 89.7 68 61.8
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.6e-16 89.0 114 44.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-14 85.1 167 37.1
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 3.6e-14 83.6 127 38.6
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 4.7e-14 83.2 155 36.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 8.0e-14 82.4 328 28.4
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 6.3e-11 72.8 321 27.7
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.8e-10 71.2 45 66.7
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 3.2e-10 70.5 86 46.5
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 7.0e-10 69.3 84 47.6
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 9.2e-10 68.9 84 46.4
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.6e-09 68.2 84 46.4
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 4.5e-09 66.6 55 58.2
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 3.9e-08 63.5 287 27.9
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 2.5e-07 60.8 55 50.9
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 7.3e-07 59.3 65 49.2
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 9.5e-07 58.9 52 50.0
PGSC0003DMG400032822 Solanum tuberosum HOM05D005116 ORTHO05D005937 3.6e-06 57.0 78 51.3


User provided reference genes

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