Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 0.0e+00 1533.1 983 100.0
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 3.2e-171 606.7 860 49.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.1e-152 545.0 862 44.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 3.3e-152 543.5 813 48.5
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 6.3e-151 539.3 789 48.2
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 4.1e-150 536.6 774 47.9
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 5.7e-144 516.2 849 43.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.1e-142 511.9 808 43.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 5.3e-142 509.6 796 48.2
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.5e-141 506.9 915 45.5
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.3e-140 505.0 904 42.3
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 2.2e-140 504.2 860 43.4
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.3e-137 494.2 878 42.7
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 6.3e-135 486.1 817 42.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.2e-133 481.9 860 42.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.7e-133 480.7 872 41.7
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.5e-131 474.9 797 43.0
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.5e-131 474.9 780 48.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.5e-131 474.2 793 42.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 4.2e-131 473.4 797 42.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.7e-130 470.7 820 40.7
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 4.0e-129 466.8 803 39.9
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 8.8e-129 465.7 727 42.9
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.7e-128 463.0 730 41.6
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.3e-127 461.8 731 41.5
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 2.8e-127 460.7 793 43.5
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 6.3e-127 459.5 834 43.2
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 5.9e-125 453.0 781 47.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 5.9e-125 453.0 880 39.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.7e-124 451.4 785 44.6
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.8e-124 450.3 812 46.1
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 6.6e-124 449.5 755 41.1
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.6e-123 446.4 838 39.5
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 9.5e-123 445.7 891 40.7
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.6e-122 444.9 868 42.4
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.7e-122 443.4 771 39.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.3e-121 441.0 795 39.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.2e-121 439.9 779 42.7
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 6.8e-121 439.5 831 41.9
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.0e-120 438.0 820 40.6
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 7.5e-120 436.0 799 40.7
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.7e-119 434.9 804 40.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.4e-119 433.0 861 40.8
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.8e-118 431.4 781 40.5
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.0e-117 427.9 872 38.5
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.2e-114 418.7 686 44.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.1e-114 417.9 857 39.2
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.2e-112 412.1 719 48.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.4e-112 410.6 899 42.3
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.4e-112 410.2 906 40.4
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 4.4e-112 410.2 788 37.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.3e-111 408.7 873 38.1
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.9e-111 407.5 724 38.3
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.4e-110 405.2 810 39.3
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 7.0e-110 402.9 779 37.7
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 9.2e-110 402.5 791 45.1
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 3.5e-109 400.6 756 39.4
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.5e-109 400.6 806 36.7
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.0e-108 399.1 861 36.5
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 2.3e-108 397.9 917 34.9
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.9e-107 394.8 727 36.7
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 2.5e-107 394.4 815 37.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.2e-106 392.1 833 37.9
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.3e-105 387.9 731 37.9
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.1e-105 387.5 810 37.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 8.9e-105 386.0 826 37.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 7.5e-104 382.9 781 37.0
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.1e-101 374.8 706 37.5
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 6.0e-101 373.2 874 34.8
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 6.6e-100 369.8 748 36.8
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.8e-98 364.4 918 37.1
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.4e-97 362.1 787 37.4
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 6.8e-97 359.8 762 40.8
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 8.9e-97 359.4 797 36.1
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.0e-96 358.2 706 35.1
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.6e-96 357.8 787 37.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.6e-96 357.8 919 37.4
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 3.4e-96 357.5 765 35.3
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 4.4e-96 357.1 787 37.1
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 2.9e-95 354.4 743 38.2
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.9e-94 351.7 798 38.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 2.4e-94 351.3 829 40.4
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.1e-93 348.2 724 35.4
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.6e-91 340.1 706 34.4
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 9.6e-91 339.3 709 37.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.6e-90 337.4 636 37.6
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 9.9e-88 329.3 715 37.1
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.7e-87 328.6 811 35.3
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.9e-87 327.8 748 36.2
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.4e-86 325.5 802 35.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 4.2e-86 323.9 777 34.7
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 4.2e-86 323.9 743 33.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 5.4e-86 323.6 740 35.4
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 7.1e-86 323.2 884 36.3
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.7e-84 318.5 816 35.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-84 318.2 823 34.0
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.3e-83 314.3 724 33.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 6.2e-82 310.1 882 30.4
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.1e-81 309.3 736 35.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.2e-80 305.8 833 31.7
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 9.3e-78 296.2 891 29.7
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.5e-75 288.9 835 32.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 7.4e-75 286.6 889 35.3
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-74 285.8 704 38.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 9.0e-73 279.6 830 36.9
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.6e-69 268.9 723 33.3
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 5.1e-68 263.8 695 32.2
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 6.7e-68 263.5 853 30.5
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 5.6e-67 260.4 1006 29.4
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.8e-66 258.1 723 30.0
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 4.9e-63 247.3 209 59.8
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 5.5e-62 243.8 295 46.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.7e-60 236.9 760 31.1
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.3e-59 234.6 429 43.1
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.1e-57 228.0 784 28.3
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.1e-57 227.6 793 30.8
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 7.2e-54 216.9 661 34.0
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.3e-51 208.0 274 43.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 2.0e-48 198.7 171 55.0
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.1e-45 188.7 275 44.7
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.0e-44 186.4 751 27.0
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 6.1e-37 160.6 144 58.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.1e-35 156.4 191 45.5
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 7.4e-35 153.7 291 37.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 4.8e-34 151.0 212 44.3
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 2.0e-32 145.6 411 35.5
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.5e-30 139.4 169 47.9
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 3.2e-30 138.3 782 31.2
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.2e-27 129.8 152 49.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.2e-22 111.3 305 32.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 4.2e-22 111.3 323 32.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.2e-21 109.8 196 35.7
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 6.8e-20 104.0 212 33.5
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.4e-19 101.7 232 33.2
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.9e-14 85.9 233 31.8
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 3.2e-14 85.1 76 59.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.6e-13 82.8 128 38.3
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 2.0e-08 65.9 61 57.4
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 4.5e-08 64.7 61 57.4


User provided reference genes

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