Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 4.5e-138 494.6 247 100.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.4e-51 206.5 237 51.1
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.9e-48 196.8 236 51.7
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-48 195.7 238 52.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.3e-48 195.7 237 52.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.2e-47 194.1 209 53.6
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 6.2e-47 191.8 236 50.8
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.2e-47 191.8 236 50.8
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.2e-47 191.8 236 50.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.8e-46 190.3 239 49.4
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.4e-43 179.9 238 50.4
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.6e-42 175.6 225 51.1
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 7.8e-42 174.9 206 51.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.6e-41 171.8 233 49.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.5e-40 169.9 233 48.5
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 3.3e-40 169.5 250 45.2
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.6e-40 168.7 245 46.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 9.6e-40 167.9 234 49.1
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.6e-39 167.2 244 48.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.1e-39 166.8 236 46.6
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 3.6e-39 166.0 233 48.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 6.2e-39 165.2 234 47.4
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.2e-39 165.2 227 47.6
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.4e-38 164.1 234 47.9
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.3e-38 162.2 228 49.1
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.9e-38 161.8 233 48.1
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 9.0e-38 161.4 235 46.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.0e-38 161.4 229 47.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.0e-38 161.4 229 47.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-37 161.0 233 47.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.6e-37 159.8 221 49.8
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.7e-36 157.1 234 45.7
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 4.9e-36 155.6 233 45.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-35 154.1 235 48.5
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.4e-35 154.1 236 46.2
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.2e-35 152.9 226 47.3
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 4.2e-35 152.5 234 46.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-35 151.8 235 48.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-34 151.0 236 47.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.2e-34 151.0 227 47.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.0e-34 148.7 233 43.3
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 6.0e-34 148.7 245 45.7
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.0e-33 147.9 234 43.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.7e-33 147.1 224 42.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 2.3e-33 146.7 234 43.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.9e-33 146.0 223 43.9
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 5.1e-33 145.6 210 46.2
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 5.1e-33 145.6 238 41.6
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-32 143.7 222 46.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.9e-32 143.7 223 41.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.9e-32 143.7 233 43.8
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 5.6e-32 142.1 249 39.8
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.6e-31 140.6 227 44.5
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.1e-31 138.3 230 41.3
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-30 137.9 236 41.1
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.8e-30 137.1 230 41.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.8e-30 137.1 236 42.8
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.4e-30 136.7 236 41.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.4e-30 136.7 212 42.9
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.1e-30 136.3 242 42.1
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.3e-30 135.6 236 40.3
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 9.0e-30 134.8 238 40.8
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 9.0e-30 134.8 235 41.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 9.0e-30 134.8 234 43.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-29 134.0 218 43.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-29 134.0 218 43.1
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-29 133.7 214 42.1
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.0e-29 133.7 240 41.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.6e-29 133.3 239 41.8
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-29 133.3 233 41.2
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 4.5e-29 132.5 215 42.8
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.5e-29 132.5 156 54.5
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 7.6e-29 131.7 246 39.4
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.9e-29 131.3 251 41.4
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.9e-29 131.3 205 44.4
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.3e-28 131.0 245 39.6
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-28 131.0 214 40.7
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.7e-28 130.6 244 40.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.2e-28 130.2 238 40.8
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.8e-28 129.4 233 39.5
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 8.4e-28 128.3 240 40.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 8.4e-28 128.3 226 39.4
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.1e-27 127.9 212 44.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.1e-27 127.9 209 42.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.4e-27 127.5 225 43.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.9e-27 127.1 233 39.5
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.9e-27 127.1 214 43.0
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.4e-27 126.7 235 40.4
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 4.2e-27 125.9 232 42.2
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 5.5e-27 125.6 236 41.1
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.1e-27 125.2 207 43.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 7.1e-27 125.2 209 41.1
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 9.3e-27 124.8 235 38.7
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.3e-27 124.8 227 41.9
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 9.3e-27 124.8 209 43.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 9.3e-27 124.8 236 40.3
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.3e-27 124.8 218 41.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-26 124.4 232 41.8
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.2e-26 124.4 232 40.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.6e-26 124.0 232 38.8
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-26 123.2 205 42.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-26 123.2 225 40.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.5e-26 122.9 213 42.3
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.6e-26 122.5 225 40.0
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.0e-26 122.1 206 42.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.9e-26 121.7 216 42.1
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 7.9e-26 121.7 207 42.0
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-25 120.9 212 41.5
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.3e-25 120.9 172 44.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-25 120.9 210 42.9
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.3e-25 120.9 225 40.9
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.3e-25 120.9 231 39.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-25 120.6 226 40.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.9e-25 119.4 223 42.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 8.7e-25 118.2 167 43.1
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-24 117.9 230 41.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-24 117.5 233 39.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.5e-24 117.5 226 39.4
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 3.3e-24 116.3 225 40.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 4.3e-24 115.9 231 37.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.6e-24 115.5 209 39.7
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.6e-24 115.5 229 38.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 7.4e-24 115.2 208 41.8
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.4e-24 115.2 234 38.5
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-23 114.4 208 41.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.6e-23 114.0 170 45.3
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.1e-23 113.6 154 47.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.7e-23 112.8 222 38.7
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.2e-23 112.1 205 39.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 6.2e-23 112.1 213 38.0
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 8.1e-23 111.7 210 39.5
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.1e-23 111.7 236 39.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 8.1e-23 111.7 235 37.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.1e-22 111.3 205 39.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-22 110.9 213 39.0
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-22 110.9 236 39.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.4e-22 110.9 236 39.4
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.8e-22 110.5 228 38.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.3e-22 109.0 191 38.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.9e-22 108.6 222 41.4
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.2e-21 107.8 229 38.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.6e-21 106.7 227 37.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-21 105.9 205 37.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 5.8e-21 105.5 219 35.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 7.6e-21 105.1 237 35.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-20 104.4 226 38.5
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-20 104.0 223 37.2
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.2e-20 103.6 229 34.9
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.4e-20 101.7 233 37.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.4e-20 101.7 233 37.8
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.4e-19 100.9 227 35.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.2e-19 99.4 138 47.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 9.3e-19 98.2 154 43.5
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-18 97.8 233 36.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.7e-18 96.7 154 44.2
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 4.6e-18 95.9 220 38.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.9e-18 95.1 154 42.9
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.3e-17 94.4 206 34.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.7e-17 92.0 192 35.9
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.5e-16 90.1 152 39.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.7e-16 89.0 214 38.3
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 9.6e-16 88.2 221 34.8
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.1e-14 84.7 145 41.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.4e-14 84.3 141 38.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.9e-14 82.0 223 35.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.0e-13 80.5 212 34.9
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.3e-12 77.8 215 34.0
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.7e-12 77.4 214 34.6
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.7e-12 77.4 136 37.5
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.2e-12 77.0 224 33.0
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 8.4e-12 75.1 215 34.9
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-11 74.3 197 32.5
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-11 73.9 224 32.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.2e-11 73.2 220 33.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 4.2e-11 72.8 224 32.1
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.3e-11 71.6 106 46.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-10 70.1 220 32.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.1e-10 68.9 159 35.8
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.0e-09 68.2 293 29.4
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.3e-07 61.2 99 37.4
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.1e-06 58.2 82 41.5


User provided reference genes

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