Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 6.7e-92 340.9 200 100.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 7.2e-86 320.9 200 95.0
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 9.5e-38 161.0 191 52.9
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.8e-37 159.5 190 52.1
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 5.2e-36 155.2 191 53.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 3.4e-35 152.5 190 51.6
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 7.5e-35 151.4 197 49.7
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.7e-34 149.1 164 57.9
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 3.7e-34 149.1 127 66.9
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 8.3e-34 147.9 200 56.0
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 8.3e-34 147.9 205 50.2
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.4e-33 147.1 133 63.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.8e-33 146.7 197 57.4
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.4e-33 146.4 197 49.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.4e-33 146.4 197 50.8
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 3.2e-33 146.0 196 51.0
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 3.2e-33 146.0 137 61.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 7.0e-33 144.8 170 51.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 9.2e-33 144.4 166 59.6
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.6e-32 143.7 138 57.2
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.6e-32 143.7 94 81.9
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.6e-32 143.7 204 48.5
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-32 142.9 203 51.7
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 3.5e-32 142.5 138 62.3
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.5e-32 142.5 138 62.3
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.5e-32 142.5 193 50.8
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 4.6e-32 142.1 180 50.6
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.0e-32 141.7 198 49.5
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.0e-31 141.0 181 50.8
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.0e-31 141.0 139 68.3
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.3e-31 140.6 142 59.9
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.3e-31 140.6 182 48.9
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.7e-31 140.2 91 82.4
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.7e-31 140.2 91 82.4
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.7e-31 140.2 200 47.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.7e-31 140.2 187 48.7
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.3e-31 139.8 200 51.5
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 3.0e-31 139.4 195 49.7
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 3.0e-31 139.4 184 50.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 3.9e-31 139.0 135 59.3
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.9e-31 139.0 140 62.1
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 3.9e-31 139.0 187 48.1
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.1e-30 137.5 197 46.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.9e-30 136.7 94 75.5
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.9e-30 136.7 92 78.3
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.9e-30 136.7 92 78.3
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.9e-30 136.7 92 78.3
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.9e-30 136.7 198 48.0
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.9e-30 136.7 95 74.7
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.5e-30 136.3 92 77.2
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.5e-30 136.3 194 44.8
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.5e-30 136.3 194 45.4
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.5e-30 136.3 155 61.9
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 2.5e-30 136.3 155 61.9
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.5e-30 136.3 201 49.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 3.3e-30 136.0 94 75.5
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 3.3e-30 136.0 176 57.4
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.3e-30 136.0 209 48.8
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.3e-30 136.0 196 49.5
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.3e-30 136.0 199 49.7
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 4.3e-30 135.6 97 73.2
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 4.3e-30 135.6 94 75.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 4.3e-30 135.6 132 60.6
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 5.6e-30 135.2 195 45.6
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.6e-30 135.2 197 46.7
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.6e-30 135.2 125 61.6
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 5.6e-30 135.2 188 50.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.6e-30 135.2 128 60.2
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 5.6e-30 135.2 192 53.6
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 5.6e-30 135.2 127 70.9
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 7.3e-30 134.8 93 75.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 7.3e-30 134.8 93 75.3
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 7.3e-30 134.8 93 75.3
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.2e-29 134.0 178 50.0
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.2e-29 134.0 207 45.4
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.6e-29 133.7 202 46.0
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.6e-29 133.7 93 75.3
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 2.1e-29 133.3 94 74.5
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.1e-29 133.3 197 46.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.8e-29 132.9 204 47.1
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.8e-29 132.9 95 72.6
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 3.6e-29 132.5 91 75.8
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 4.7e-29 132.1 197 43.7
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.7e-29 132.1 93 74.2
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 8.0e-29 131.3 135 58.5
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.4e-28 130.6 95 70.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.4e-28 130.6 200 46.0
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.8e-28 130.2 199 45.2
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.3e-28 129.8 197 48.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.3e-28 129.8 132 58.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 4.0e-28 129.0 177 49.7
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 5.2e-28 128.6 145 57.9
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 5.2e-28 128.6 133 60.2
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.8e-28 128.3 135 57.0
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 6.8e-28 128.3 96 69.8
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.2e-27 127.5 87 75.9
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.5e-27 127.1 190 44.7
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 2.0e-27 126.7 133 58.6
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 4.4e-27 125.6 135 57.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 4.4e-27 125.6 128 56.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 5.8e-27 125.2 172 48.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.4e-26 121.7 137 53.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.4e-25 120.6 83 74.7
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.9e-25 120.2 82 75.6
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.4e-25 119.8 206 48.1
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.6e-24 117.1 234 38.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 3.0e-23 112.8 72 80.6
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.9e-22 110.2 97 60.8
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 3.3e-22 109.4 79 72.2
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 5.6e-22 108.6 95 58.9
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 7.3e-22 108.2 82 68.3
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 2.0e-19 100.1 76 71.1
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 2.9e-18 96.3 85 60.0
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.7e-18 95.9 86 55.8
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.3e-18 94.7 100 56.0
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.3e-18 94.7 100 53.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.5e-14 83.2 70 68.6
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.1e-12 77.8 157 38.2
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.1e-12 77.8 131 45.0
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-12 77.4 85 41.2
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.9e-12 74.7 57 71.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.5e-11 73.9 58 72.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.5e-11 73.9 45 82.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.0e-11 73.6 102 58.8
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 5.8e-11 72.0 86 47.7
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 8.4e-10 68.2 136 39.7
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.7e-08 63.2 85 36.5
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 4.6e-08 62.4 90 45.6
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 6.0e-08 62.0 138 34.8
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 3.0e-07 59.7 122 35.2
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 7.3e-06 55.1 146 37.7


User provided reference genes

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