Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 3.9e-73 278.1 148 100.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.7e-60 236.1 145 84.1
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.7e-60 236.1 145 84.8
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.2e-60 235.7 145 84.1
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.1e-59 233.4 148 85.8
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.5e-59 233.0 148 85.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.9e-59 232.6 146 84.2
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 84.5
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.9e-59 232.6 146 82.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 2.5e-59 232.3 142 85.2
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 3.2e-59 231.9 145 83.4
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 4.2e-59 231.5 146 84.9
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 5.5e-59 231.1 148 84.5
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 7.2e-59 230.7 145 84.1
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 7.2e-59 230.7 145 84.1
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 7.2e-59 230.7 141 87.2
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 7.2e-59 230.7 141 85.1
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 9.4e-59 230.3 145 82.8
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 9.4e-59 230.3 141 84.4
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 145 82.8
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.6e-58 229.6 146 83.6
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.1e-58 229.2 146 82.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.1e-58 229.2 146 82.9
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.1e-58 229.2 148 82.4
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.7e-58 228.8 146 80.8
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 2.7e-58 228.8 144 84.7
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.7e-58 228.8 146 81.5
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.7e-58 228.8 146 81.5
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.7e-58 228.8 145 84.1
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.6e-58 228.4 141 83.7
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.6e-58 228.4 145 82.8
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.7e-58 228.0 141 83.7
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 4.7e-58 228.0 141 84.4
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 6.1e-58 227.6 148 81.8
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 6.1e-58 227.6 149 82.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 8.0e-58 227.3 147 80.3
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 8.0e-58 227.3 147 82.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 8.0e-58 227.3 148 81.8
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 8.0e-58 227.3 148 81.8
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 8.0e-58 227.3 144 83.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.0e-57 226.9 142 83.8
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.0e-57 226.9 146 80.1
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.0e-57 226.9 146 82.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.4e-57 226.5 141 82.3
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.4e-57 226.5 146 80.8
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.4e-57 226.5 149 81.9
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 146 80.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 79.7
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 2.3e-57 225.7 146 81.5
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.3e-57 225.7 146 80.8
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.0e-57 225.3 146 79.5
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 3.0e-57 225.3 145 80.7
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 3.0e-57 225.3 146 82.2
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 4.0e-57 224.9 146 81.5
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 5.2e-57 224.6 145 80.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 5.2e-57 224.6 140 85.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 6.7e-57 224.2 142 83.1
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 6.7e-57 224.2 145 81.4
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 6.7e-57 224.2 146 82.2
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 6.7e-57 224.2 146 82.2
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 8.8e-57 223.8 141 81.6
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 8.8e-57 223.8 151 80.8
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.2e-56 223.4 135 87.4
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.2e-56 223.4 144 82.6
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.2e-56 223.4 141 80.1
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.2e-56 223.4 149 80.5
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.2e-56 223.4 143 80.4
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.0e-56 222.6 143 80.4
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.6e-56 222.2 146 80.8
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 3.3e-56 221.9 146 81.5
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 7.5e-56 220.7 140 82.9
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.3e-55 219.9 140 80.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.7e-55 219.5 144 80.6
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.2e-55 219.2 142 81.7
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.2e-55 219.2 146 80.8
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.8e-55 218.8 141 81.6
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.8e-55 218.8 141 81.6
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.7e-55 218.4 146 80.1
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-55 218.4 146 80.1
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-55 218.4 146 79.5
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.8e-55 218.0 144 79.2
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 6.3e-55 217.6 141 81.6
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 80.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-54 216.9 146 78.1
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.4e-54 216.5 148 79.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.8e-54 216.1 145 77.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.1e-54 215.3 146 76.7
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 4.1e-54 214.9 146 75.3
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 4.1e-54 214.9 146 77.4
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 9.1e-54 213.8 143 77.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 9.1e-54 213.8 143 77.6
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.7e-53 212.2 140 76.4
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 3.5e-53 211.8 143 76.9
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.7e-52 209.5 138 79.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 2.9e-52 208.8 136 80.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.8e-52 208.4 139 77.7
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 5.0e-52 208.0 137 78.8
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 6.5e-52 207.6 142 78.2
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 8.5e-52 207.2 142 75.4
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.1e-51 206.8 142 75.4
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.5e-51 206.5 146 74.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 5.5e-51 204.5 126 85.7
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.2e-50 203.4 146 71.9
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 6.1e-50 201.1 146 71.2
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 8.0e-50 200.7 146 71.2
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 3.4e-48 195.3 146 71.2
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 4.4e-48 194.9 146 69.9
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 7.5e-48 194.1 136 76.5
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 2.4e-46 189.1 144 67.4
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 4.1e-46 188.3 142 70.4
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 9.1e-46 187.2 144 66.7
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 9.1e-46 187.2 147 67.3
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-45 186.8 142 69.7
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.2e-45 186.8 142 69.7
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.6e-45 186.4 141 67.4
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-45 186.0 139 67.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.0e-45 186.0 139 67.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.0e-45 186.0 139 67.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.5e-45 185.3 144 68.1
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 7.7e-45 184.1 116 81.9
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.7e-44 183.0 139 65.5
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.3e-44 182.6 119 79.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 3.8e-44 181.8 147 67.3
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.8e-44 181.8 137 68.6
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.1e-43 180.3 140 66.4
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.1e-43 180.3 134 66.4
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.1e-43 180.3 147 66.7
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.5e-43 179.9 146 68.5
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 6.1e-42 174.5 142 64.1
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 6.1e-42 174.5 142 64.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.2e-41 171.4 135 63.7
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 8.9e-41 170.6 142 60.6
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.3e-39 166.8 147 61.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.8e-38 162.9 147 58.5
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 9.5e-35 150.6 136 58.1
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 6.1e-34 147.9 133 60.9
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.3e-31 140.2 134 56.7
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.2e-31 139.4 112 59.8
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.9e-27 126.3 141 52.5
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.6e-26 123.2 110 65.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.4e-24 115.2 86 70.9
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.9e-23 111.7 99 61.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.4e-22 108.2 140 42.1
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 3.6e-18 95.5 138 37.0
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 9.2e-14 80.9 88 48.9
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 2.1e-13 79.7 46 82.6


User provided reference genes

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