Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 0.0e+00 1159.8 616 100.0
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 6.3e-250 867.5 620 71.1
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 3.8e-247 858.2 615 74.1
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 2.1e-245 852.4 633 68.9
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-244 849.7 633 68.7
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 6.8e-244 847.4 616 70.0
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.1e-241 840.1 624 73.4
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.4e-241 839.7 615 68.6
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.4e-241 839.7 618 72.3
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 5.4e-241 837.8 617 72.8
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.3e-239 833.2 606 68.3
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 8.6e-239 830.5 616 69.2
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 8.6e-239 830.5 609 68.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.1e-238 830.1 610 71.5
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.5e-238 828.9 619 69.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 4.3e-238 828.2 617 68.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 6.1e-237 824.3 616 68.5
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.5e-235 819.7 622 68.0
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 3.4e-235 818.5 622 68.0
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 4.4e-235 818.1 619 67.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 9.8e-235 817.0 616 67.5
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.9e-234 815.5 616 67.2
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 3.7e-234 815.1 618 71.0
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 8.3e-234 813.9 613 70.6
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.1e-233 813.5 634 65.9
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.3e-231 806.6 623 67.4
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.7e-231 806.2 616 69.6
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 3.0e-231 805.4 623 65.5
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.6e-229 798.5 618 66.3
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.4e-228 796.6 618 66.3
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.3e-228 795.8 618 70.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.5e-227 793.1 626 69.3
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.3e-226 790.0 628 64.5
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 2.2e-226 789.3 620 65.3
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.9e-226 788.9 620 65.5
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.1e-225 786.9 622 66.1
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 9.2e-225 783.9 633 65.6
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 2.7e-224 782.3 617 65.5
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.3e-223 780.0 621 64.9
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.1e-222 776.9 618 68.1
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.2e-221 773.5 623 63.2
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.6e-221 773.1 619 63.3
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.6e-221 773.1 618 64.6
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 3.6e-221 771.9 612 67.0
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.7e-221 771.5 628 67.2
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.1e-220 770.4 619 64.9
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.4e-220 770.0 623 66.5
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 1.8e-220 769.6 619 62.8
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 6.8e-220 767.7 626 63.6
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.5e-219 766.5 623 62.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 9.8e-219 763.8 623 66.0
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.1e-217 760.4 619 66.7
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.9e-217 759.6 625 65.9
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.4e-217 758.1 604 63.7
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 3.5e-216 755.4 617 62.6
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 7.8e-216 754.2 624 63.5
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-214 750.0 569 68.2
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.1e-213 746.1 637 64.1
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 8.1e-213 744.2 612 61.4
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.1e-212 743.8 569 67.1
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.8e-212 743.0 612 64.4
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.1e-212 742.3 615 64.2
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 4.0e-212 741.9 605 63.0
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 6.8e-212 741.1 610 64.4
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.5e-211 740.0 618 61.7
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 2.0e-211 739.6 610 65.1
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 4.4e-211 738.4 618 62.1
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 7.6e-211 737.6 616 64.4
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 1.7e-210 736.5 621 59.9
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 4.9e-210 734.9 616 61.2
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.1e-209 733.8 621 61.8
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.4e-209 732.6 621 59.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.2e-209 732.3 625 65.0
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.7e-208 729.2 621 60.1
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 7.8e-208 727.6 617 61.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.9e-207 725.3 632 63.8
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.5e-206 723.4 615 60.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.5e-206 722.6 622 60.8
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.4e-204 716.8 619 64.1
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 3.1e-204 715.7 613 60.0
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 3.4e-203 712.2 731 55.4
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 5.8e-203 711.4 628 61.0
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.4e-201 706.1 615 64.1
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.2e-201 705.7 615 64.2
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 7.8e-200 701.0 668 55.2
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 8.1e-197 691.0 598 61.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.1e-196 690.6 628 55.7
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 9.9e-195 684.1 641 55.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.3e-194 683.7 645 56.9
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.3e-194 683.7 626 60.1
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.1e-193 680.6 626 58.6
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.3e-191 673.7 616 58.4
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 8.7e-191 671.0 683 54.2
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 4.6e-184 648.7 737 48.7
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 7.9e-184 647.9 649 53.5
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.6e-179 632.9 512 63.3
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 7.1e-177 624.8 597 58.6
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.3e-173 614.0 639 51.5
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.6e-173 613.6 616 54.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 6.9e-172 608.2 619 55.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 2.0e-171 606.7 581 57.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 2.2e-170 603.2 623 56.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.9e-170 602.8 600 54.7
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 3.1e-164 582.8 616 51.0
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 9.7e-158 561.2 656 51.7
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 6.1e-144 515.4 513 53.2
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 5.6e-121 439.1 411 56.0
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 5.6e-121 439.1 326 64.1
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-116 423.7 419 55.4
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.0e-116 422.2 445 57.1
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-112 410.6 412 55.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.8e-111 407.5 447 54.8
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 5.2e-111 406.0 334 60.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-108 398.3 402 55.0
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.3e-105 385.6 412 52.4
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-102 377.9 419 52.5
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.7e-101 373.2 419 51.1
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-100 370.9 393 53.7
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.6e-99 366.3 380 51.3
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.1e-91 340.9 207 80.7
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.6e-91 339.7 380 52.1
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-84 318.2 415 46.0
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.8e-79 301.2 475 34.5
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.2e-77 294.3 583 33.1
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.0e-71 272.3 514 35.8
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.5e-65 254.2 523 31.2
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 3.3e-65 253.8 208 64.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.8e-64 250.8 524 30.9
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 7.9e-59 232.6 167 67.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 4.8e-56 223.4 256 49.6
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 5.1e-50 203.4 165 61.8
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.5e-46 191.8 517 26.5
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.0e-42 177.6 237 44.3
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.7e-40 171.8 237 43.9
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.0e-37 162.5 111 72.1
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.3e-37 162.2 103 73.8
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.1e-33 149.1 98 73.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.1e-31 142.5 108 63.9
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 7.0e-31 139.8 109 65.1
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 7.2e-28 129.8 220 38.6
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 5.2e-26 123.6 89 66.3
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 7.7e-22 109.8 96 53.1
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.9e-21 107.8 101 52.5
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 3.8e-21 107.5 86 54.7
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 3.2e-20 104.4 163 41.1
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.4e-20 102.8 80 62.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.4e-18 99.0 70 61.4
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.4e-18 99.0 70 61.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.7e-17 93.6 302 29.8
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.1e-15 89.4 69 58.0
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 44 75.0
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 44 75.0
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 9.5e-12 76.3 48 70.8
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 4.4e-09 67.4 53 54.7
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 4.1e-07 60.8 96 38.5


User provided reference genes

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