Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 0.0e+00 2208.7 1261 100.0
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.0e-299 1033.9 1249 49.7
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 4.0e-291 1005.4 1242 50.2
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 6.2e-268 928.3 1213 48.1
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 1.8e-267 926.8 1246 51.5
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.1e-262 908.7 1180 49.6
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 1.2e-260 904.0 1242 46.3
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.1e-259 899.4 1252 47.4
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 8.4e-257 891.3 1197 53.6
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.8e-252 875.5 1252 50.8
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 2.4e-248 863.2 1069 46.1
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 6.6e-246 855.1 1220 46.6
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 1.2e-242 844.3 1267 50.4
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 4.6e-239 832.4 1238 44.6
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 3.3e-237 826.2 1099 51.2
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.4e-235 820.8 1035 54.0
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 1.2e-226 791.2 1189 44.0
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.3e-225 787.7 1031 45.6
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.4e-224 784.3 1054 43.5
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 2.5e-224 783.5 1039 51.9
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 2.3e-222 776.9 1082 46.5
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 1.1e-221 774.6 1244 43.9
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 9.7e-221 771.5 1005 45.2
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 1.3e-220 771.2 1221 39.2
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 3.1e-219 766.5 1029 44.1
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.1e-216 758.1 1040 43.8
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.1e-216 758.1 1207 46.3
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 8.8e-214 748.4 1236 38.7
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 2.0e-213 747.3 1036 43.5
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.7e-212 744.2 1240 41.4
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 3.1e-211 740.0 1198 41.2
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 3.1e-211 740.0 1230 47.0
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 3.4e-210 736.5 945 45.6
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 8.5e-209 731.9 1237 39.3
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 1.1e-203 714.9 1222 37.6
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 7.0e-203 712.2 1256 38.6
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 7.7e-202 708.8 1172 37.4
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 1.5e-200 704.5 1090 45.6
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 3.2e-200 703.4 1228 37.3
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 4.7e-199 699.5 1242 36.3
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 5.2e-198 696.0 1246 38.8
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 1.5e-197 694.5 1066 47.7
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 2.0e-197 694.1 1196 40.4
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 2.6e-197 693.7 1253 38.9
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 1.0e-193 681.8 1218 40.3
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.5e-192 677.2 1088 43.3
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.2e-192 676.8 1202 45.3
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 9.4e-192 675.2 1057 40.3
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 1.5e-189 667.9 1168 40.7
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 2.8e-188 663.7 1236 39.1
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.1e-187 661.8 1204 39.9
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 2.4e-187 660.6 965 51.1
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 5.9e-186 656.0 946 40.9
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 5.0e-185 652.9 1001 49.7
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 8.5e-185 652.1 1238 38.4
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 1.9e-184 651.0 1043 46.2
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 2.4e-179 634.0 1215 35.9
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 4.1e-179 633.3 761 49.0
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 7.7e-178 629.0 1234 34.5
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.9e-177 627.1 1234 34.4
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 1.1e-176 625.2 1234 34.3
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 2.8e-175 620.5 1043 39.6
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.4e-171 608.2 1387 31.9
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 2.4e-171 607.4 1075 43.4
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 4.6e-170 603.2 1083 39.0
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.3e-169 601.7 1014 38.1
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 4.9e-164 583.2 895 36.9
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 6.0e-162 576.2 957 43.4
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 3.1e-158 563.9 776 39.2
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 4.0e-158 563.5 1038 42.4
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 5.8e-157 559.7 775 39.1
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 2.2e-156 557.8 802 42.9
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 1.1e-155 555.4 1211 37.0
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 4.1e-155 553.5 762 38.2
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.3e-153 547.7 785 39.2
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 2.5e-152 544.3 977 39.3
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 2.7e-146 524.2 963 35.9
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 1.1e-144 518.8 760 42.2
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 1.5e-144 518.5 1228 30.9
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 4.0e-142 510.4 704 41.9
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 3.6e-127 460.7 749 40.5
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 9.0e-126 456.1 742 40.4
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 3.4e-117 427.6 637 35.9
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.5e-117 427.2 1016 33.5
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.3e-116 425.6 672 44.9
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 4.9e-116 423.7 1170 29.4
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 6.5e-116 423.3 907 30.8
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 1.8e-113 415.2 785 37.5
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 5.1e-113 413.7 862 41.0
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.1e-102 377.9 917 35.3
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.0e-100 372.9 1224 36.6
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 7.2e-91 340.1 352 56.8
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 2.6e-88 331.6 943 31.2
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 3.5e-85 321.2 379 54.6
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.5e-80 303.5 351 52.4
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 1.6e-74 285.8 250 53.2
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.5e-64 250.4 308 47.1
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 2.1e-58 232.3 992 24.0
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 2.0e-56 225.7 197 57.9
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 3.4e-56 224.9 945 23.7
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 2.0e-48 199.1 203 49.3
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 9.2e-46 190.3 181 52.5
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.4e-41 176.4 248 41.5
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 9.2e-38 163.7 667 31.5
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.0e-36 158.7 203 48.8
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 1.9e-35 156.0 203 48.3
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 2.1e-34 152.5 306 41.8
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 1.3e-31 143.3 212 36.8
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 1.3e-28 133.3 113 56.6
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 3.9e-20 105.1 335 27.5
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.4e-17 96.7 121 43.0
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.8e-17 96.3 137 48.2
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.5e-16 93.2 88 54.5
MBI05_g36421_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 8.4e-15 87.4 232 30.2
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.4e-14 86.7 121 43.8
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 1.9e-11 76.3 86 37.2
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 2.5e-11 75.9 87 44.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.6e-11 74.7 634 19.1
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.1e-09 70.5 644 18.8
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 5.3e-09 68.2 229 24.5
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 3.4e-08 65.5 367 19.9
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 4.5e-08 65.1 82 37.8
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 4.5e-08 65.1 128 27.3
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 9.9e-08 63.9 289 20.4
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 9.9e-08 63.9 276 22.5
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 1.3e-07 63.5 214 26.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.7e-07 63.2 145 28.3
MBI05_g36422_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.2e-07 62.8 76 38.2
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.9e-07 62.4 379 21.6
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 4.9e-07 61.6 123 30.9
TAR629G1135 Trochodendron aralioides HOM05D005622 ORTHO05D002854 4.9e-07 61.6 143 25.2
PSO170G2530 Papaver somniferum HOM05D008994 ORTHO05D010954 6.4e-07 61.2 105 34.3
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 6.4e-07 61.2 253 22.5
Nitab4.5_0007438g0010 Nicotiana tabacum HOM05D005622 ORTHO05D002854 8.4e-07 60.8 137 25.5
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.1e-06 60.5 294 22.8
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 1.1e-06 60.5 290 21.0
GSVIVG01012216001 Vitis vinifera HOM05D005622 ORTHO05D002854 1.1e-06 60.5 129 27.9
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.4e-06 60.1 156 28.2
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.4e-06 60.1 363 20.1
HanXRQChr07g0205001 Helianthus annuus HOM05D000162 ORTHO05D000090 1.9e-06 59.7 150 30.0
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 1.9e-06 59.7 283 21.2
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.4e-06 59.3 242 23.6
Os12g0527900 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D000383 2.4e-06 59.3 197 21.3
Cc02_g11640 Coffea canephora HOM05D007956 ORTHO05D010152 3.2e-06 58.9 247 23.9
FvH4_3g35200 Fragaria vesca HOM05D000162 ORTHO05D000090 3.2e-06 58.9 231 22.5
PGSC0003DMG400037705 Solanum tuberosum HOM05D005622 ORTHO05D002854 3.2e-06 58.9 239 24.7
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 4.2e-06 58.5 151 24.5
Glyma.01G057600 Glycine max HOM05D005622 ORTHO05D002854 5.5e-06 58.2 206 24.8
Oeu049407.2 Olea europaea HOM05D007390 ORTHO05D009114 5.5e-06 58.2 165 24.2
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 5.5e-06 58.2 206 23.3
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 7.1e-06 57.8 128 29.7
Migut.E00052 Erythranthe guttata HOM05D005622 ORTHO05D002854 7.1e-06 57.8 139 25.9
Nn7g37731 Nelumbo nucifera HOM05D030124 ORTHO05D014237 7.1e-06 57.8 216 23.1
Prupe.1G285700 Prunus persica HOM05D005622 ORTHO05D002854 7.1e-06 57.8 129 26.4
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 7.1e-06 57.8 152 23.0
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 7.1e-06 57.8 150 30.0
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 9.3e-06 57.4 235 21.3


User provided reference genes

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