Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 0.0e+00 2040.8 1056 100.0
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 0.0e+00 1407.1 1055 70.0
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 0.0e+00 1399.8 1064 68.8
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1382.9 1075 67.5
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1376.3 1063 70.2
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 0.0e+00 1371.7 1049 70.4
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1369.4 1063 69.9
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1365.5 1077 66.9
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 0.0e+00 1363.6 1054 67.1
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 0.0e+00 1362.8 1055 68.2
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1357.8 1121 64.2
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 0.0e+00 1356.7 1058 67.6
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 0.0e+00 1355.5 1054 66.8
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 0.0e+00 1355.1 1054 66.7
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1350.9 1072 68.5
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 0.0e+00 1346.3 1082 65.6
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 0.0e+00 1343.6 1077 66.0
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1333.9 1080 64.6
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1327.0 1053 65.8
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1326.2 1055 65.5
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 0.0e+00 1325.8 1145 63.1
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1324.3 1057 65.5
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1323.1 1057 65.5
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 0.0e+00 1317.8 1055 65.0
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1309.3 1082 64.3
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1308.1 1142 62.1
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1307.0 1057 67.3
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1306.2 1082 64.3
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1303.5 1058 65.0
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1301.6 1057 65.1
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1299.6 1057 65.3
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 0.0e+00 1297.0 1068 64.6
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1295.0 1057 65.0
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 0.0e+00 1294.6 1092 62.5
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1294.6 1069 64.9
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1294.6 1072 63.9
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1292.3 1053 64.3
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 0.0e+00 1290.0 1075 63.6
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 0.0e+00 1289.6 1059 64.3
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 0.0e+00 1289.2 1075 64.2
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1287.3 1045 67.0
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 0.0e+00 1286.2 1069 64.3
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1284.2 1054 64.5
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1281.5 1072 63.9
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1280.4 1047 66.7
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 0.0e+00 1276.5 1079 62.9
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1274.2 1073 63.8
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 0.0e+00 1271.9 1060 63.1
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 0.0e+00 1271.9 1059 63.2
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1271.5 1071 63.7
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1269.6 1054 63.1
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 0.0e+00 1268.4 1070 62.9
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1266.9 1068 62.6
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 0.0e+00 1266.1 1047 62.8
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 0.0e+00 1264.2 1057 62.8
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 0.0e+00 1262.7 1072 62.3
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1262.3 1055 62.5
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 0.0e+00 1261.9 1072 61.8
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1261.5 1056 62.5
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1261.1 1054 62.9
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 0.0e+00 1261.1 1064 62.5
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1260.0 1051 63.2
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 0.0e+00 1259.2 1072 61.8
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1257.7 1051 63.1
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 0.0e+00 1257.7 1056 62.4
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1256.1 1057 63.6
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 0.0e+00 1253.0 1087 61.6
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 0.0e+00 1251.1 1056 62.2
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 0.0e+00 1245.0 1040 64.8
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 0.0e+00 1244.2 1195 57.2
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1238.8 995 67.3
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 0.0e+00 1238.8 1081 61.6
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1238.8 1048 61.6
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 0.0e+00 1236.9 1077 61.7
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1226.8 1067 62.6
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1223.4 1081 61.4
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 0.0e+00 1223.0 1060 61.1
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 0.0e+00 1205.3 1061 61.5
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1202.6 1059 60.6
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 0.0e+00 1201.0 1056 61.5
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 0.0e+00 1199.1 998 62.7
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1196.8 1006 61.7
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 0.0e+00 1194.9 1066 59.6
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1190.3 1007 61.8
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 0.0e+00 1189.9 1064 58.7
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 0.0e+00 1184.1 1173 56.4
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1182.5 1082 58.1
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1175.6 1073 58.8
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 0.0e+00 1175.2 1054 59.6
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 0.0e+00 1174.8 1092 59.4
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1174.8 1080 57.8
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 0.0e+00 1168.7 1056 58.7
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 0.0e+00 1168.3 933 67.1
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1164.8 1072 58.0
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 0.0e+00 1164.4 1053 58.1
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 0.0e+00 1162.9 1055 60.4
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 0.0e+00 1156.4 1071 59.9
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1150.6 1064 57.3
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 0.0e+00 1147.1 1072 58.2
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1145.6 1078 58.4
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 0.0e+00 1144.8 1082 58.6
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 0.0e+00 1107.0 952 62.4
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1104.7 1002 58.8
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 0.0e+00 1086.2 1111 54.8
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 7.2e-312 1074.7 1089 53.6
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 3.0e-300 1035.4 1054 52.8
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 4.1e-297 1025.0 910 60.7
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 1.1e-291 1006.9 1001 55.5
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 3.8e-287 991.9 1100 50.6
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 4.7e-285 984.9 1003 52.7
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 3.2e-278 962.2 878 58.2
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 2.0e-275 953.0 1084 49.8
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 2.0e-275 953.0 1076 50.3
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 2.2e-271 939.5 707 70.4
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 1.9e-270 936.4 1026 50.7
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 2.1e-269 932.9 1137 46.9
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 4.8e-266 921.8 694 70.2
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 7.7e-256 887.9 737 62.8
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.5e-246 857.1 1071 47.9
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 1.7e-234 817.0 951 49.3
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.6e-231 804.7 960 46.6
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.3e-223 780.8 1015 45.7
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 7.8e-216 755.0 1125 40.6
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 1.8e-204 717.2 591 65.0
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 3.4e-195 686.4 1094 38.9
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 8.4e-194 681.8 1123 37.6
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 1.8e-172 610.9 1049 37.4
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 1.5e-171 607.8 496 64.3
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 3.6e-152 543.5 474 61.0
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.5e-146 522.7 642 45.0
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 2.6e-126 457.6 358 67.3
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.5e-121 441.0 721 37.9
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 2.1e-120 438.0 464 52.6
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.4e-116 425.2 497 47.7
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.9e-114 417.2 393 56.7
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 6.6e-106 389.8 312 67.3
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-94 350.9 904 31.7
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 4.0e-87 327.4 338 55.9
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 9.6e-81 306.2 982 28.2
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 6.9e-63 246.9 162 75.3
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 6.5e-61 240.4 1012 23.9
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.7e-57 227.3 362 36.7
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.7e-56 224.6 388 35.3
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 4.8e-56 224.2 220 55.9
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 1.4e-52 212.6 990 23.9
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.2e-52 211.5 289 38.1
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 2.7e-51 208.4 160 63.8
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 2.7e-51 208.4 160 64.4
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 1.8e-50 205.7 119 83.2
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 2.3e-50 205.3 272 43.4
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 9.7e-49 199.9 1248 23.8
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 2.6e-46 191.8 307 40.1
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 7.2e-44 183.7 170 60.6
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.7e-43 181.0 291 36.4
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 2.6e-41 175.3 297 34.7
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.8e-40 171.0 181 46.4
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 7.0e-39 167.2 126 64.3
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-37 161.8 159 47.2
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-36 159.8 157 48.4
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-34 152.9 220 36.8
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.0e-34 151.4 136 51.5
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.3e-32 144.1 150 45.3
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.0e-31 140.6 134 50.0
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 3.5e-30 138.3 98 70.4
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 6.1e-27 127.5 183 43.7
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.8e-26 125.9 122 50.0
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 2.2e-24 119.0 125 43.2
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-24 118.6 125 43.2
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 4.9e-24 117.9 65 86.2
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 3.1e-23 115.2 94 66.0
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.8e-22 110.5 119 43.7
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 3.8e-21 108.2 167 35.3
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-20 106.7 124 40.3
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.3e-20 105.1 104 47.1
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.6e-19 102.8 103 45.6
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.1e-19 100.9 114 45.6
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.5e-17 94.0 107 42.1
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 1.6e-14 86.3 97 50.5
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-13 82.8 75 49.3
Medtr1g492720 Medicago truncatula HOM05D003580 ORTHO05D004441 9.5e-12 77.0 71 60.6
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 8.0e-11 73.9 66 54.5
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 2.4e-07 62.4 49 65.3


User provided reference genes

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