Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 5.1e-99 364.4 181 100.0
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.5e-90 336.3 181 91.2
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 89.5
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.8e-89 332.0 181 89.0
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.8e-89 331.3 181 87.3
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 6.3e-89 330.9 179 89.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 6.3e-89 330.9 179 89.9
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 8.2e-89 330.5 181 89.0
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-88 330.1 179 87.7
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.1e-88 330.1 179 87.7
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.1e-88 330.1 181 88.4
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-88 329.7 179 88.8
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 2.4e-88 328.9 181 87.3
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 3.1e-88 328.6 181 87.8
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 4.1e-88 328.2 181 87.3
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 5.3e-88 327.8 181 86.7
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 87.3
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 9.0e-88 327.0 179 87.7
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-87 326.2 181 87.3
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 86.2
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.6e-87 325.5 179 86.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 86.2
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.9e-86 322.0 181 86.2
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.5e-86 320.9 181 85.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 8.5e-86 320.5 181 86.7
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.4e-85 319.7 181 86.2
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.2e-85 318.5 181 87.3
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 86.2
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 84.5
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.2e-85 318.2 179 84.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 86.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 83.4
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 9.4e-85 317.0 182 85.7
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.4e-85 317.0 181 85.6
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.2e-84 316.6 182 83.5
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.6e-84 315.1 180 85.6
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 84.5
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 4.6e-84 314.7 181 85.6
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 6.1e-84 314.3 181 85.6
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 85.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.0e-83 313.5 176 86.4
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.0e-83 313.5 168 91.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.4e-83 313.2 181 82.9
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.8e-83 312.8 179 83.8
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.0e-83 312.0 166 91.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.9e-83 311.6 181 84.5
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 3.9e-83 311.6 181 85.6
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.8e-83 310.5 181 82.3
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 8.8e-83 310.5 181 82.9
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 81.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.0e-82 309.3 180 85.6
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.5e-82 308.9 181 81.8
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 2.5e-82 308.9 181 81.8
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.3e-82 308.5 181 82.3
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 86.4
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.3e-82 308.5 181 81.2
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 81.8
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 81.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 5.7e-82 307.8 200 78.5
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 82.3
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 82.3
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 82.3
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 84.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 82.3
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 7.4e-82 307.4 173 86.7
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 80.7
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 1.7e-81 306.2 176 84.7
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.7e-81 306.2 176 84.7
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-81 305.8 182 81.3
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.2e-81 305.8 180 84.4
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 3.7e-81 305.1 176 83.5
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 4.8e-81 304.7 203 77.3
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 4.8e-81 304.7 175 82.9
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.3e-81 304.3 182 81.3
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 6.3e-81 304.3 182 81.3
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.3e-81 304.3 182 81.3
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 6.3e-81 304.3 181 82.3
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 8.2e-81 303.9 166 88.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 1.4e-80 303.1 176 84.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 81.2
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 79.6
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.8e-80 302.8 182 80.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.8e-80 302.8 182 80.8
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.8e-80 302.8 180 83.9
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.8e-80 302.8 172 84.3
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.4e-80 302.4 181 80.7
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.1e-80 302.0 172 83.7
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.1e-80 301.6 170 87.1
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 5.3e-80 301.2 174 84.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.3e-80 301.2 174 84.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 6.9e-80 300.8 169 84.6
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.0e-79 299.3 180 82.8
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 79.6
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 80.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.0e-79 299.3 181 80.1
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 4.5e-79 298.1 174 82.2
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.5e-79 298.1 181 82.3
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 5.9e-79 297.7 173 83.2
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.0e-78 297.0 175 84.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.7e-78 296.2 178 82.6
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 2.2e-78 295.8 178 83.1
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.9e-78 295.4 168 86.9
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 3.8e-78 295.0 178 82.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.0e-78 294.7 175 82.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 6.5e-78 294.3 168 83.9
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 8.5e-78 293.9 172 82.0
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 8.5e-78 293.9 181 75.7
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 8.5e-78 293.9 168 83.3
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.1e-77 293.5 178 82.0
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.1e-77 293.5 183 79.8
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 80.7
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 3.2e-77 292.0 169 83.4
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.7e-76 288.9 177 81.9
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 6.1e-76 287.7 183 79.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 6.1e-76 287.7 183 79.8
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.0e-75 287.0 178 81.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.0e-75 287.0 181 80.1
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.9e-75 285.0 181 80.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.9e-75 285.0 181 76.2
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.1e-75 284.6 168 83.9
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-75 284.6 170 84.1
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.6e-74 282.3 168 82.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 4.4e-74 281.6 180 78.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.7e-71 270.8 259 58.3
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.0e-70 270.4 182 73.6
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.2e-69 265.4 167 73.7
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 3.2e-69 265.4 179 73.2
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.1e-68 262.7 150 86.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.8e-64 249.6 178 69.7
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.8e-64 249.6 148 83.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 2.6e-63 245.7 174 69.0
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.3e-62 243.4 170 67.6
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.9e-61 239.6 168 67.9
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.5e-61 239.2 181 69.6
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 3.4e-50 202.2 172 57.6
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.8e-49 199.1 134 74.6
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.7e-46 189.9 172 61.6
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.8e-41 172.6 100 86.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.5e-37 160.2 102 79.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.5e-37 160.2 116 72.4
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.9e-32 143.3 174 42.0
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.9e-32 143.3 79 88.6
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.1e-29 134.0 179 40.2
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-27 125.9 75 81.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-27 125.9 75 81.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.8e-26 120.9 69 84.1
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.3e-22 109.8 100 59.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.1e-22 108.6 57 87.7
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-21 105.5 54 90.7
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 4.7e-20 102.1 51 94.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.8e-19 100.1 169 36.1
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 8.9e-19 97.8 62 72.6
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.4e-18 95.9 83 63.9
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 9.9e-18 94.4 165 34.5
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.6e-14 81.3 90 50.0
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.8e-11 73.6 88 48.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.1e-11 72.8 51 72.5
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 4.0e-11 72.4 45 75.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.0e-11 72.4 37 91.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 9.9e-10 67.8 38 86.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.9e-09 65.5 50 66.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 8.4e-09 64.7 64 54.7
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-08 64.3 35 82.9
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 2.4e-08 63.2 38 76.3
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 2.4e-08 63.2 38 76.3
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 5.4e-08 62.0 43 67.4
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.4e-08 62.0 42 69.0
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 3.5e-07 59.3 43 67.4


User provided reference genes

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