Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 5.2e-227 790.8 424 100.0
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 6.1e-135 485.0 436 63.8
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 3.7e-132 475.7 437 64.1
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.9e-128 463.4 459 59.7
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 4.7e-119 432.2 436 59.6
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.2e-116 423.3 435 58.9
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.5e-112 409.8 426 57.5
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.5e-112 409.8 426 57.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 6.1e-111 405.2 453 56.5
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 3.0e-110 402.9 427 54.8
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 5.2e-110 402.1 459 54.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.1e-107 392.9 430 57.4
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.1e-107 392.9 457 54.0
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.2e-106 391.0 465 53.1
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.2e-106 391.0 427 55.0
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.0e-106 390.2 465 53.1
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.5e-106 389.4 431 55.7
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 4.5e-106 389.0 461 53.4
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.5e-104 384.0 445 53.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.5e-104 383.3 465 52.9
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.3e-104 382.9 430 54.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 2.8e-103 379.8 424 54.7
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 5.2e-102 375.6 431 54.1
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.4e-101 372.9 440 53.0
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.7e-101 372.1 447 53.5
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 5.7e-101 372.1 430 53.3
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 1.1e-99 367.9 447 55.7
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.3e-97 360.9 426 52.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 5.0e-97 359.0 426 52.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 6.8e-94 348.6 442 52.5
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.5e-93 347.4 437 51.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-91 341.3 422 52.4
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.4e-91 340.9 436 50.7
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 9.2e-91 338.2 380 54.2
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 3.5e-90 336.3 445 49.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.5e-88 330.1 443 48.8
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.2e-87 327.8 435 49.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 2.8e-87 326.6 439 50.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.8e-87 326.6 431 50.6
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.2e-87 325.5 435 49.0
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.0e-87 325.1 431 50.3
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.6e-85 320.1 433 50.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 3.7e-84 316.2 431 49.9
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 4.6e-82 309.3 425 48.9
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.8e-82 308.5 425 47.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 8.6e-81 305.1 426 47.9
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 8.6e-81 305.1 440 47.3
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.6e-80 302.4 427 47.5
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.8e-79 300.1 429 47.6
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.2e-79 298.9 415 46.7
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 7.5e-77 292.0 432 46.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 3.7e-76 289.7 406 48.5
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.3e-73 281.2 432 45.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 7.3e-72 275.4 450 46.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.6e-71 274.2 431 43.2
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.8e-71 273.5 274 59.9
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.0e-69 267.3 412 46.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.6e-69 266.9 467 41.8
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.4e-67 261.2 457 42.9
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-66 258.1 431 43.9
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-66 258.1 431 43.9
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 2.1e-66 257.3 342 46.8
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-66 257.3 411 44.0
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-66 257.3 411 44.0
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.0e-66 255.8 429 41.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.9e-65 253.1 414 43.7
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.1e-64 251.5 410 42.7
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.5e-64 251.1 428 41.6
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 4.3e-64 249.6 246 57.3
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.6e-63 247.7 438 43.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.8e-63 246.9 435 41.1
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.3e-62 242.7 420 42.4
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.3e-62 242.7 437 40.7
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.7e-60 237.7 411 42.3
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.9e-60 236.9 424 38.9
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.1e-59 235.0 434 40.8
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.4e-59 234.6 427 41.2
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-58 230.7 431 41.3
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 4.8e-55 219.5 431 40.4
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.8e-55 219.5 427 38.6
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.8e-55 219.5 427 38.9
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 9.9e-53 211.8 423 39.0
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.9e-51 207.6 412 40.5
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.6e-50 203.0 419 37.7
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.6e-50 203.0 419 37.7
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 8.7e-49 198.7 434 38.5
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.5e-48 198.0 419 37.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.5e-48 197.2 494 38.5
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 7.4e-48 195.7 427 37.7
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 6.2e-47 192.6 484 37.0
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 8.1e-47 192.2 407 37.1
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 9.0e-46 188.7 411 36.5
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.2e-45 188.3 407 36.6
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.5e-45 186.4 451 35.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 5.8e-45 186.0 428 34.8
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.3e-44 184.9 495 36.2
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.7e-44 184.5 440 37.0
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 2.5e-43 180.6 97 90.7
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.2e-43 179.9 434 36.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 7.1e-43 179.1 442 34.6
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-42 177.9 459 36.4
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.6e-42 177.9 449 35.6
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.5e-42 176.8 458 35.4
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 6.0e-42 176.0 417 37.9
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 3.9e-41 173.3 415 35.2
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 8.7e-41 172.2 440 32.5
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 8.7e-41 172.2 458 35.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 2.5e-40 170.6 458 35.4
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-39 167.9 456 35.7
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 2.8e-39 167.2 426 34.0
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.1e-38 165.2 418 35.4
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.1e-38 165.2 418 35.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.4e-38 164.9 440 36.8
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 5.3e-38 162.9 422 33.6
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-36 157.9 410 37.1
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.9e-36 157.1 438 32.9
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 6.5e-36 156.0 430 33.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 2.5e-35 154.1 287 39.4
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 2.5e-35 154.1 287 39.4
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 3.0e-33 147.1 448 32.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.0e-33 147.1 250 42.4
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 5.1e-33 146.4 479 31.3
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.5e-32 144.1 337 35.9
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 9.7e-32 142.1 410 34.6
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.3e-31 141.7 419 34.6
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-31 141.4 317 36.0
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 2.8e-31 140.6 410 34.4
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.7e-31 140.2 321 37.1
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 6.3e-31 139.4 407 31.7
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 8.2e-31 139.0 192 45.3
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.8e-30 137.9 433 35.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.3e-28 131.7 448 35.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.2e-27 127.1 358 36.0
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.6e-26 124.8 327 36.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.7e-26 124.0 190 38.9
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.0e-25 122.1 345 32.5
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.0e-25 120.6 414 30.4
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.9e-25 120.2 414 30.4
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.1e-25 119.8 437 30.9
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 6.7e-25 119.4 256 39.1
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 2.5e-24 117.5 225 40.0
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 3.3e-24 117.1 455 30.5
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.3e-23 112.8 455 29.7
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.8e-22 111.3 426 32.6
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 6.9e-22 109.4 454 28.2
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-19 101.3 449 32.3
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.1e-18 97.8 118 47.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 1.0e-17 95.5 103 50.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.2e-15 87.8 360 28.9
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.9e-13 79.7 175 36.0
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 7.7e-13 79.3 192 33.3
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 1.0e-12 79.0 124 40.3
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.3e-12 78.6 127 42.5
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.2e-09 66.6 112 39.3
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 5.7e-08 63.2 82 50.0
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 2.8e-07 60.8 52 63.5
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.8e-07 60.1 168 33.9
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 1.1e-06 58.9 149 30.9


User provided reference genes

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