Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 1.6e-191 672.5 340 100.0
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 1.1e-129 467.2 332 69.9
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 8.3e-127 457.6 332 68.1
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 5.4e-126 454.9 341 66.9
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.0e-124 450.7 343 65.9
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.1e-123 447.2 333 67.0
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.5e-123 446.8 338 66.6
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 3.1e-121 439.1 326 67.5
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.6e-120 436.0 333 65.8
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 4.4e-120 435.3 332 66.9
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 1.2e-117 427.2 343 59.8
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 1.2e-117 427.2 331 64.7
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.3e-116 423.7 327 66.1
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 9.6e-115 417.5 324 64.5
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 1.6e-114 416.8 335 63.9
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 2.8e-114 416.0 326 65.3
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 2.4e-113 412.9 332 63.0
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 2.4e-113 412.9 316 65.5
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 9.9e-112 407.5 331 62.8
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 2.2e-111 406.4 329 59.3
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 3.8e-111 405.6 330 60.9
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 4.2e-110 402.1 322 63.0
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 1.2e-109 400.6 335 60.0
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 2.7e-109 399.4 328 62.5
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 1.3e-108 397.1 343 60.9
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 1.3e-108 397.1 335 60.3
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.7e-108 396.7 343 60.9
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 1.7e-108 396.7 341 62.8
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 3.9e-108 395.6 343 60.6
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 3.9e-108 395.6 336 62.2
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 6.6e-108 394.8 336 60.4
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 8.7e-108 394.4 328 60.4
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 1.9e-107 393.3 335 60.0
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 3.3e-107 392.5 335 60.6
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 6.2e-106 388.3 334 62.3
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 2.4e-105 386.3 328 59.5
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 2.0e-104 383.3 331 61.3
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 3.4e-104 382.5 334 56.6
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 9.9e-104 380.9 328 62.8
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 1.7e-103 380.2 321 59.5
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 2.2e-103 379.8 334 57.8
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 6.4e-103 378.3 338 58.6
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 8.4e-103 377.9 346 58.1
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.9e-102 376.7 309 62.1
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 1.9e-102 376.7 322 57.8
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 3.5e-101 372.5 338 59.2
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 3.5e-101 372.5 337 58.8
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 6.0e-101 371.7 349 55.6
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 1.7e-100 370.2 322 57.8
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 1.1e-99 367.5 349 55.3
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 2.5e-99 366.3 319 59.9
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 2.5e-99 366.3 346 55.8
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 2.5e-99 366.3 346 56.4
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 4.3e-99 365.5 349 55.0
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 5.6e-99 365.2 334 56.6
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 5.6e-99 365.2 327 58.1
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 3.6e-98 362.5 329 59.3
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 2.4e-97 359.8 362 49.7
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 5.3e-97 358.6 339 56.0
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 6.9e-97 358.2 346 54.9
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 6.9e-97 358.2 346 54.9
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 9.0e-97 357.8 335 56.7
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 9.0e-97 357.8 327 54.7
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.2e-96 357.5 328 52.4
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 1.5e-96 357.1 337 55.8
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 2.0e-96 356.7 337 55.8
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 2.6e-96 356.3 337 55.8
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 2.6e-96 356.3 327 54.1
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 4.5e-96 355.5 326 57.4
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 5.8e-96 355.1 326 54.3
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 9.9e-96 354.4 327 55.4
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.3e-95 354.0 327 55.7
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 1.7e-95 353.6 337 52.2
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 1.1e-94 350.9 324 55.2
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 9.3e-94 347.8 335 55.8
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.2e-93 347.4 324 56.8
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 3.5e-93 345.9 291 62.2
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 4.6e-93 345.5 339 54.0
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 3.0e-92 342.8 325 57.2
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 3.9e-92 342.4 328 54.3
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 8.7e-92 341.3 336 53.9
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 1.5e-91 340.5 335 53.1
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 1.9e-91 340.1 305 56.7
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.8e-90 336.3 254 69.7
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 4.0e-89 332.4 258 63.6
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 1.2e-88 330.9 340 53.2
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 1.2e-88 330.9 340 53.2
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 1.2e-88 330.9 340 53.2
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 1.2e-88 330.9 331 52.6
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 2.5e-86 323.2 340 53.2
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 3.2e-86 322.8 340 52.1
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 4.2e-86 322.4 340 52.4
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 4.6e-85 318.9 330 54.8
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 6.0e-85 318.5 326 52.1
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 1.8e-84 317.0 330 54.5
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.5e-83 313.2 321 50.5
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 6.2e-82 308.5 303 56.1
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.2e-80 304.3 312 54.8
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 2.0e-80 303.5 253 60.5
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 5.1e-76 288.9 250 60.8
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 1.1e-75 287.7 272 55.9
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 8.2e-74 281.6 290 53.4
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 3.4e-72 276.2 262 59.5
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 1.1e-70 271.2 380 44.7
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.4e-70 270.8 328 44.5
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 1.9e-70 270.4 264 56.4
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 7.2e-70 268.5 313 49.2
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.6e-69 267.3 257 52.9
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 5.1e-68 262.3 174 66.1
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 6.7e-68 261.9 323 43.3
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 4.8e-66 255.8 174 67.2
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 2.9e-63 246.5 202 64.4
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.9e-63 246.5 170 67.1
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 8.5e-63 245.0 325 41.2
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 1.7e-58 230.7 342 41.5
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 2.8e-58 229.9 319 40.4
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.4e-57 227.6 174 59.8
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 3.6e-53 213.0 289 45.7
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 1.8e-52 210.7 173 59.0
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 2.6e-51 206.8 289 43.6
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.2e-50 203.8 331 37.5
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 2.4e-49 200.3 339 37.2
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 7.2e-46 188.7 177 50.8
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 6.1e-45 185.7 162 54.9
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 3.1e-41 173.3 278 42.1
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 4.2e-38 162.9 163 52.8
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 1.0e-36 158.3 147 55.1
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 1.5e-35 154.5 93 76.3
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 7.2e-30 135.6 196 36.7
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 2.1e-29 134.0 152 51.3
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 8.0e-29 132.1 107 59.8
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 5.2e-28 129.4 244 34.0
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.1e-25 121.7 81 67.9
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 3.0e-23 113.6 109 61.5
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.7e-18 96.7 78 53.8
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 2.5e-14 84.0 114 39.5
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 6.2e-13 79.3 76 40.8
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 3.5e-08 63.5 88 42.0
MCO12G089 Micromonas commoda HOM05D000571 ORTHO05D003096 6.0e-08 62.8 221 25.3
Glyma.18G220400 Glycine max HOM05D000968 ORTHO05D001687 3.9e-07 60.1 64 37.5
Sp4g27420 Schrenkiella parvula HOM05D000968 ORTHO05D001687 6.6e-07 59.3 120 32.5
AUR62013637 Chenopodium quinoa HOM05D000968 ORTHO05D001687 8.6e-07 58.9 191 29.3
Oeu006900.3 Olea europaea HOM05D000968 ORTHO05D003096 8.6e-07 58.9 58 63.8
Cc06_g02450 Coffea canephora HOM05D000968 ORTHO05D003096 1.1e-06 58.5 148 35.8
Sabra14G0076500 Salix brachista HOM05D000968 ORTHO05D001687 1.1e-06 58.5 138 33.3
Lalb_Chr13g0291211 Lupinus albus HOM05D000968 ORTHO05D003096 1.9e-06 57.8 161 27.3
Haze_20820 Corylus avellana HOM05D000080 ORTHO05D000053 3.3e-06 57.0 58 44.8
Duzib128G1577 Durio zibethinus HOM05D000968 ORTHO05D003096 3.3e-06 57.0 121 29.8
THA.LOC104817246 Tarenaya hassleriana HOM05D000968 ORTHO05D001687 3.3e-06 57.0 120 32.5
Aa31LG3G1820 Aethionema arabicum HOM05D000968 ORTHO05D003096 5.6e-06 56.2 147 31.3
Cfa017353 Carpinus fangiana HOM05D000968 ORTHO05D003096 5.6e-06 56.2 144 27.1
Lalb_Chr07g0192961 Lupinus albus HOM05D000968 ORTHO05D003096 5.6e-06 56.2 161 27.3
Peaxi162Scf00094g01120 Petunia axillaris HOM05D000968 ORTHO05D003096 5.6e-06 56.2 147 33.3
SGA_v2.0_scaffold126G33770 Striga asiatica HOM05D000968 ORTHO05D003096 7.3e-06 55.8 66 57.6
AL4G44520 Arabidopsis lyrata HOM05D000968 ORTHO05D001687 9.5e-06 55.5 119 31.1
EL10As1g23092 Beta vulgaris HOM05D000968 ORTHO05D003096 9.5e-06 55.5 58 44.8
BcaB02g08980 Brassica carinata HOM05D000968 ORTHO05D001687 9.5e-06 55.5 126 30.2
A05p39640 Brassica napus HOM05D000968 ORTHO05D003096 9.5e-06 55.5 148 29.7
Ca_07808_v3 Cicer arietinum L. HOM05D000968 ORTHO05D001687 9.5e-06 55.5 125 31.2
Thhalv10001560m.g Eutrema salsugineum HOM05D000968 ORTHO05D001687 9.5e-06 55.5 119 31.1
Phvul.010G015000 Phaseolus vulgaris HOM05D000968 ORTHO05D003096 9.5e-06 55.5 58 50.0


User provided reference genes

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