Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 3.2e-62 241.5 115 100.0
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 2.4e-49 198.7 105 94.3
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 2.4e-41 172.2 110 76.4
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 6.9e-41 170.6 110 75.5
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 6.9e-41 170.6 110 75.5
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 9.0e-41 170.2 105 78.1
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.0e-40 169.1 110 77.3
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.6e-40 168.7 112 75.9
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.3e-39 166.4 103 77.7
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 2.9e-39 165.2 105 74.3
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 6.4e-39 164.1 103 76.7
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 8.4e-39 163.7 103 78.6
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.1e-38 163.3 103 77.7
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 1.1e-38 163.3 103 76.7
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.4e-38 162.9 110 73.6
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.9e-38 162.5 110 73.6
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 2.4e-38 162.2 101 76.2
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.2e-38 161.8 112 73.2
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 4.2e-38 161.4 103 74.8
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.2e-38 161.4 103 77.7
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 4.2e-38 161.4 110 70.9
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 4.2e-38 161.4 110 70.0
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.2e-38 161.4 103 71.8
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 4.2e-38 161.4 103 75.7
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 5.5e-38 161.0 112 72.3
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.5e-38 161.0 112 72.3
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 7.1e-38 160.6 110 71.8
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 7.1e-38 160.6 103 70.9
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-37 159.8 108 73.1
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 1.2e-37 159.8 110 71.8
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.6e-37 159.5 103 76.7
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.6e-37 159.5 103 76.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.6e-37 159.5 103 76.7
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 2.1e-37 159.1 103 74.8
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 2.1e-37 159.1 103 74.8
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.1e-37 159.1 103 75.7
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 2.7e-37 158.7 108 72.2
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 3.5e-37 158.3 110 70.9
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 4.6e-37 157.9 102 75.5
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 4.6e-37 157.9 103 73.8
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 6.0e-37 157.5 110 70.0
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 7.9e-37 157.1 110 70.0
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.0e-36 156.8 110 69.1
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.0e-36 156.8 103 71.8
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.3e-36 156.4 103 72.8
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.8e-36 156.0 110 70.0
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.8e-36 156.0 99 76.8
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 2.3e-36 155.6 103 71.8
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 2.3e-36 155.6 110 70.9
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.0e-36 155.2 110 69.1
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.0e-36 155.2 110 69.1
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.0e-36 155.2 110 70.0
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.9e-36 154.8 103 69.9
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 3.9e-36 154.8 103 70.9
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.9e-36 154.8 110 68.2
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 5.1e-36 154.5 104 73.1
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 5.1e-36 154.5 110 69.1
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.7e-36 153.7 110 69.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 8.7e-36 153.7 110 69.1
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 8.7e-36 153.7 103 71.8
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.1e-35 153.3 103 71.8
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.1e-35 153.3 110 69.1
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.1e-35 153.3 110 67.3
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-35 153.3 110 68.2
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.5e-35 152.9 108 69.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.5e-35 152.9 108 69.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.5e-35 152.9 110 69.1
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.9e-35 152.5 110 69.1
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.9e-35 152.5 103 73.8
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 2.5e-35 152.1 103 73.8
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 2.5e-35 152.1 103 73.8
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.5e-35 152.1 110 68.2
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.3e-35 151.8 110 70.9
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.3e-35 151.8 103 72.8
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 4.3e-35 151.4 103 73.8
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 5.6e-35 151.0 103 72.8
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 5.6e-35 151.0 110 68.2
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 5.6e-35 151.0 101 71.3
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 5.6e-35 151.0 101 71.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 9.6e-35 150.2 103 70.9
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 9.6e-35 150.2 103 69.9
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 9.6e-35 150.2 103 69.9
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.3e-34 149.8 110 68.2
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 1.6e-34 149.4 110 68.2
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.1e-34 149.1 103 70.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.1e-34 149.1 103 68.9
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.8e-34 148.7 110 67.3
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.8e-34 148.7 103 68.0
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 2.8e-34 148.7 103 71.8
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.7e-34 148.3 103 69.9
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.7e-34 148.3 103 70.9
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.7e-34 148.3 103 68.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.8e-34 147.9 103 69.9
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 4.8e-34 147.9 103 68.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 6.2e-34 147.5 103 69.9
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 6.2e-34 147.5 103 69.9
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.1e-33 146.7 103 69.9
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 1.4e-33 146.4 103 68.9
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 3.1e-33 145.2 110 68.2
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 5.3e-33 144.4 97 71.1
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 9.0e-33 143.7 110 67.3
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 2.6e-32 142.1 106 66.0
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 3.4e-32 141.7 96 69.8
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 4.5e-32 141.4 97 70.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 4.5e-32 141.4 97 70.1
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 7.6e-32 140.6 102 69.6
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 7.6e-32 140.6 98 68.4
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.0e-31 140.2 97 70.1
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 1.0e-31 140.2 103 66.0
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.3e-31 139.8 97 71.1
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.2e-31 139.0 103 67.0
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.9e-31 138.7 97 70.1
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 1.1e-30 136.7 101 67.3
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.4e-30 136.3 100 65.0
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.2e-29 133.3 78 79.5
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.8e-28 129.4 90 70.0
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 3.3e-27 125.2 95 61.1
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 4.3e-27 124.8 93 65.6
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 5.7e-27 124.4 95 60.0
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.5e-24 116.3 103 54.4
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.6e-24 115.5 78 67.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 7.6e-24 114.0 93 58.1
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.3e-23 113.2 97 56.7
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.1e-22 110.2 66 75.8
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.5e-22 109.0 103 55.3
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 9.3e-22 107.1 104 51.9
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 3.5e-21 105.1 94 58.5
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 6.1e-21 104.4 99 52.5
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.0e-20 103.6 93 58.1
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.3e-20 103.2 95 52.6
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.8e-20 102.8 93 51.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.9e-19 99.4 104 57.7
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.5e-16 89.7 64 67.2
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.2e-13 80.1 90 48.9
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.4e-09 66.6 47 70.2
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.1e-09 63.9 78 47.4
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.5e-08 63.2 78 53.8


User provided reference genes

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