Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0183 Cannabis sativa HOM05D000007 ORTHO05D000039 3.9e-173 611.3 294 100.0
CANSAT64G1120 Cannabis sativa HOM05D000007 ORTHO05D000039 2.4e-167 592.0 297 97.3
CANSAT64G1947 Cannabis sativa HOM05D000007 ORTHO05D000039 6.5e-27 125.6 235 38.3
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 1.4e-21 107.8 292 28.1
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 1.8e-21 107.5 290 27.9
MD12G1213000 Malus domestica HOM05D000007 ORTHO05D000039 9.1e-21 105.1 265 27.2
FvH4_6g06820 Fragaria vesca HOM05D000007 ORTHO05D000039 4.2e-18 96.3 273 27.5
MD15G1153400 Malus domestica HOM05D000007 ORTHO05D000039 9.4e-18 95.1 280 28.6
RcHm_v2.0_Chr2g0111681 Rosa chinensis HOM05D000007 ORTHO05D000039 9.4e-18 95.1 263 25.5
CANSAT21G0589 Cannabis sativa HOM05D000007 ORTHO05D000039 3.6e-17 93.2 304 28.3
MD09G1130700 Malus domestica HOM05D000007 ORTHO05D000039 3.6e-17 93.2 280 27.5
CANSAT64G0237 Cannabis sativa HOM05D000007 ORTHO05D000039 4.7e-17 92.8 246 26.0
CANSAT54G1614 Cannabis sativa HOM05D000007 ORTHO05D000039 7.9e-17 92.0 266 28.2
FvH4_6g06760 Fragaria vesca HOM05D000007 ORTHO05D000039 1.0e-16 91.7 289 26.6
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 1.0e-16 91.7 269 27.1
CANSAT54G0074 Cannabis sativa HOM05D000007 ORTHO05D000039 1.8e-16 90.9 282 28.0
RcHm_v2.0_Chr3g0455991 Rosa chinensis HOM05D000007 ORTHO05D000039 2.3e-16 90.5 291 28.9
CANSAT11G2407 Cannabis sativa HOM05D000007 ORTHO05D000039 3.9e-16 89.7 239 29.3
CANSAT54G2366 Cannabis sativa HOM05D000007 ORTHO05D000039 5.2e-16 89.4 309 26.5
MD17G1251900 Malus domestica HOM05D000007 ORTHO05D000039 5.2e-16 89.4 266 27.1
RcHm_v2.0_Chr6g0293881 Rosa chinensis HOM05D000007 ORTHO05D000039 2.6e-15 87.0 278 26.6
RcHm_v2.0_Chr6g0293911 Rosa chinensis HOM05D000007 ORTHO05D000039 2.6e-15 87.0 278 27.0
RcHm_v2.0_Chr3g0456091 Rosa chinensis HOM05D000007 ORTHO05D000039 3.3e-15 86.7 273 26.0
RcHm_v2.0_Chr6g0262491 Rosa chinensis HOM05D000007 ORTHO05D000039 4.4e-15 86.3 298 28.5
MD17G1256000 Malus domestica HOM05D000007 ORTHO05D000039 5.7e-15 85.9 281 28.8
QL03p073760 Quercus lobata HOM05D000007 ORTHO05D000039 1.7e-14 84.3 271 27.3
Thecc.04G089800 Theobroma cacao HOM05D000007 ORTHO05D000039 4.8e-14 82.8 274 25.9
Ciclev10011921m.g Citrus clementina HOM05D000007 ORTHO05D000039 6.3e-14 82.4 276 25.7
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.3e-14 82.4 274 26.3
RcHm_v2.0_Chr3g0456291 Rosa chinensis HOM05D000007 ORTHO05D000039 6.3e-14 82.4 285 24.9
RcHm_v2.0_Chr3g0456311 Rosa chinensis HOM05D000007 ORTHO05D000039 6.3e-14 82.4 269 25.3
CANSAT64G2524 Cannabis sativa HOM05D000007 ORTHO05D000039 8.2e-14 82.0 254 26.8
MD17G1251300 Malus domestica HOM05D000007 ORTHO05D000039 8.2e-14 82.0 289 29.1
Prupe.6G319800 Prunus persica HOM05D000007 ORTHO05D000039 8.2e-14 82.0 285 23.9
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.4e-13 80.5 276 26.1
Gohir.D12G088200 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.4e-13 80.5 274 26.3
MD17G1253800 Malus domestica HOM05D000007 ORTHO05D000039 2.4e-13 80.5 271 26.6
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 2.4e-13 80.5 301 26.6
FvH4_6g06840 Fragaria vesca HOM05D000007 ORTHO05D000039 5.3e-13 79.3 269 24.9
MD17G1256300 Malus domestica HOM05D000007 ORTHO05D000039 5.3e-13 79.3 303 25.7
FAN20G0405 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.0e-13 79.0 262 24.8
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 7.0e-13 79.0 286 26.9
Gohir.A05G369700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 9.1e-13 78.6 276 26.4
Ciclev10011950m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.2e-12 78.2 260 27.3
MD17G1254200 Malus domestica HOM05D000007 ORTHO05D000039 1.6e-12 77.8 328 26.5
Gohir.D04G045600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.0e-12 77.4 276 26.1
MD17G1253700 Malus domestica HOM05D000007 ORTHO05D000039 2.0e-12 77.4 291 26.8
FvH4_6g06750 Fragaria vesca HOM05D000007 ORTHO05D000039 2.6e-12 77.0 278 24.5
FAN14G0234 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.5e-12 76.6 290 24.1
MD17G1253000 Malus domestica HOM05D000007 ORTHO05D000039 3.5e-12 76.6 289 25.6
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 4.5e-12 76.3 285 27.7
Gorai.012G050800 Gossypium raimondii HOM05D000007 ORTHO05D000039 5.9e-12 75.9 276 26.1
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 5.9e-12 75.9 285 27.0
Prupe.6G319300 Prunus persica HOM05D000007 ORTHO05D000039 5.9e-12 75.9 295 25.4
MD17G1251200 Malus domestica HOM05D000007 ORTHO05D000039 7.7e-12 75.5 290 26.2
Thecc.04G089700 Theobroma cacao HOM05D000007 ORTHO05D000039 7.7e-12 75.5 310 24.5
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 1.0e-11 75.1 274 25.2
FvH4_6g06630 Fragaria vesca HOM05D000007 ORTHO05D000039 2.2e-11 73.9 290 23.8
FvH4_6g06831 Fragaria vesca HOM05D000007 ORTHO05D000039 2.2e-11 73.9 199 28.1
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 2.9e-11 73.6 245 26.5
Ciclev10003095m.g Citrus clementina HOM05D000007 ORTHO05D000017 5.0e-11 72.8 277 26.0
Gohir.A12G083765 Gossypium hirsutum HOM05D000007 ORTHO05D000039 6.5e-11 72.4 220 25.9
MD04G1199200 Malus domestica HOM05D000007 ORTHO05D000039 6.5e-11 72.4 285 26.0
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 8.5e-11 72.0 302 24.5
PSO017G6011 Papaver somniferum HOM05D000007 ORTHO05D000017 8.5e-11 72.0 261 24.1
MD17G1256100 Malus domestica HOM05D000007 ORTHO05D000039 1.5e-10 71.2 304 27.3
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.9e-10 70.9 199 28.1
Thecc.10G169100 Theobroma cacao HOM05D000007 ORTHO05D000039 3.2e-10 70.1 244 25.0
FvH4_2g25660 Fragaria vesca HOM05D000007 ORTHO05D000039 5.5e-10 69.3 270 24.8
Lj8P354T16 Lonicera japonica HOM05D000007 ORTHO05D000039 5.5e-10 69.3 257 23.0
FAN24G0319 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.2e-10 68.9 270 24.8
ClCG10G015170 Citrullus lanatus HOM05D000007 ORTHO05D000039 9.4e-10 68.6 275 28.0
CiPaw.13G053300 Carya illinoinensis HOM05D000007 ORTHO05D000521 1.6e-09 67.8 253 24.5
FAN09G1013 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.6e-09 67.8 311 22.5
PSO832G1986 Papaver somniferum HOM05D000007 ORTHO05D000017 1.6e-09 67.8 250 24.4
PSO832G3312 Papaver somniferum HOM05D000007 ORTHO05D000017 1.6e-09 67.8 250 24.4
PSO832G3627 Papaver somniferum HOM05D000007 ORTHO05D000017 1.6e-09 67.8 248 25.0
MD16G1019000 Malus domestica HOM05D000007 ORTHO05D009073 2.1e-09 67.4 262 26.3
RcHm_v2.0_Chr5g0030551 Rosa chinensis HOM05D000007 ORTHO05D000017 2.7e-09 67.0 263 23.6
Lsat_1_v5_gn_3_24620 Lactuca sativa HOM05D000007 ORTHO05D000017 6.1e-09 65.9 271 23.2
MD17G1252000 Malus domestica HOM05D000007 ORTHO05D000039 8.0e-09 65.5 263 24.3
PSO832G1503 Papaver somniferum HOM05D000007 ORTHO05D000017 8.0e-09 65.5 219 27.4
Peaxi162Scf00705g00015 Petunia axillaris HOM05D000007 ORTHO05D000039 8.0e-09 65.5 250 23.2
Atru.chr13.1253 Acer truncatum HOM05D000007 ORTHO05D000017 1.0e-08 65.1 241 24.1
FvH4_6g06801 Fragaria vesca HOM05D000007 ORTHO05D000039 1.0e-08 65.1 232 26.7
PSO421G0356 Papaver somniferum HOM05D000007 ORTHO05D000676 1.0e-08 65.1 257 23.7
Aqoxy6G01544 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 1.4e-08 64.7 280 25.4
Medtr4g116330 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-08 64.7 233 24.9
PSO536G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 1.8e-08 64.3 159 25.2
PSO541G2088 Papaver somniferum HOM05D000007 ORTHO05D000017 1.8e-08 64.3 252 25.0
PSO541G3853 Papaver somniferum HOM05D000007 ORTHO05D000017 1.8e-08 64.3 250 24.0
PSO832G1012 Papaver somniferum HOM05D000007 ORTHO05D000017 1.8e-08 64.3 159 25.2
PSO832G3836 Papaver somniferum HOM05D000007 ORTHO05D000017 1.8e-08 64.3 159 25.2
Aqoxy1G03740 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 2.3e-08 63.9 251 23.9
DCAR_015427 Daucus carota HOM05D000007 ORTHO05D000039 2.3e-08 63.9 141 26.2
MD17G1252800 Malus domestica HOM05D000007 ORTHO05D000039 2.3e-08 63.9 263 24.3
PSO478G3951 Papaver somniferum HOM05D000007 ORTHO05D000017 2.3e-08 63.9 252 25.0
PSO541G4904 Papaver somniferum HOM05D000007 ORTHO05D000676 2.3e-08 63.9 250 23.6
PSO832G4026 Papaver somniferum HOM05D000007 ORTHO05D000017 2.3e-08 63.9 229 27.1
Aqoxy7G03124 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.0e-08 63.5 198 26.3
PSO648G0118 Papaver somniferum HOM05D000007 ORTHO05D000017 3.0e-08 63.5 287 23.3
Prupe.6G319000 Prunus persica HOM05D000007 ORTHO05D000039 3.0e-08 63.5 270 24.8
CsaV3_3G041390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 5.2e-08 62.8 276 26.1
FvH4_6g07720 Fragaria vesca HOM05D000007 ORTHO05D000039 5.2e-08 62.8 238 25.6
PSO832G0027 Papaver somniferum HOM05D000007 ORTHO05D000676 5.2e-08 62.8 147 29.3
PSO210G6981 Papaver somniferum HOM05D000007 ORTHO05D000676 6.7e-08 62.4 169 27.8
AUR62016381 Chenopodium quinoa HOM05D000007 ORTHO05D000039 8.8e-08 62.0 265 25.7
FAN14G1928 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.8e-08 62.0 234 26.5
PSO675G3766 Papaver somniferum HOM05D000007 ORTHO05D000017 8.8e-08 62.0 231 25.1
PSO675G8203 Papaver somniferum HOM05D000007 ORTHO05D000017 1.2e-07 61.6 218 25.7
vmacro17342 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.5e-07 61.2 151 26.5
PSO170G1342 Papaver somniferum HOM05D000007 ORTHO05D000017 2.0e-07 60.8 215 29.3
QL02p081705 Quercus lobata HOM05D000007 ORTHO05D000039 2.0e-07 60.8 244 23.8
EL10Ac5g10681 Beta vulgaris HOM05D000007 ORTHO05D000039 2.6e-07 60.5 220 25.9
FvH4_6g06850 Fragaria vesca HOM05D000007 ORTHO05D000039 2.6e-07 60.5 227 22.5
AUR62019380 Chenopodium quinoa HOM05D000007 ORTHO05D018280 3.3e-07 60.1 171 28.7
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 3.3e-07 60.1 274 26.3
MELO3C009863.2 Cucumis melo HOM05D000007 ORTHO05D000039 4.4e-07 59.7 274 25.5
DCAR_023489 Daucus carota HOM05D000007 ORTHO05D000017 4.4e-07 59.7 156 28.2
Eucgr.I00151 Eucalyptus grandis HOM05D000007 ORTHO05D000039 4.4e-07 59.7 329 23.1
PSO339G2408 Papaver somniferum HOM05D000007 ORTHO05D000017 4.4e-07 59.7 283 21.6
PSO541G5113 Papaver somniferum HOM05D000007 ORTHO05D000017 4.4e-07 59.7 182 24.7
PSO648G0101 Papaver somniferum HOM05D000007 ORTHO05D000017 4.4e-07 59.7 287 23.7
Ciclev10027004m.g Citrus clementina HOM05D000007 ORTHO05D000039 5.7e-07 59.3 272 23.2
DCAR_030081 Daucus carota HOM05D000007 ORTHO05D000039 5.7e-07 59.3 115 30.4
PSO339G0434 Papaver somniferum HOM05D000007 ORTHO05D000017 5.7e-07 59.3 261 23.0
Peaxi162Scf00268g00143 Petunia axillaris HOM05D000007 ORTHO05D000521 5.7e-07 59.3 262 26.0
AUR62011562 Chenopodium quinoa HOM05D000007 ORTHO05D000039 7.5e-07 58.9 265 25.7
Cc11_g07980 Coffea canephora HOM05D000007 ORTHO05D000521 7.5e-07 58.9 279 24.0
PSO210G2791 Papaver somniferum HOM05D000007 ORTHO05D000017 7.5e-07 58.9 264 24.2
PSO675G1664 Papaver somniferum HOM05D000007 ORTHO05D000017 7.5e-07 58.9 193 26.4
RcHm_v2.0_Chr6g0259371 Rosa chinensis HOM05D000007 ORTHO05D000039 7.5e-07 58.9 261 22.6
Lj4A129G111 Lonicera japonica HOM05D000007 ORTHO05D000039 9.7e-07 58.5 273 22.7
PSO170G5854 Papaver somniferum HOM05D000007 ORTHO05D000017 9.7e-07 58.5 139 26.6
PSO675G8184 Papaver somniferum HOM05D000007 ORTHO05D000676 9.7e-07 58.5 262 24.0
ECA246G4363 Erigeron canadensis HOM05D000007 ORTHO05D000017 1.3e-06 58.2 181 25.4
FvH4_6g06700 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-06 58.2 264 22.7
PSO339G4245 Papaver somniferum HOM05D000007 ORTHO05D000017 1.3e-06 58.2 261 23.0
Thecc.04G201900 Theobroma cacao HOM05D000007 ORTHO05D025156 1.3e-06 58.2 206 24.8
HanXRQChr16g0511581 Helianthus annuus HOM05D000171 ORTHO05D009073 1.7e-06 57.8 238 26.1
Peaxi162Scf01590g00001 Petunia axillaris HOM05D000007 ORTHO05D000039 1.7e-06 57.8 265 21.1
Peaxi162Scf75437g00003 Petunia axillaris HOM05D000007 ORTHO05D000039 1.7e-06 57.8 265 21.1
PSO017G1533 Papaver somniferum HOM05D000007 ORTHO05D000017 2.2e-06 57.4 309 22.7
PSO349G0212 Papaver somniferum HOM05D000007 ORTHO05D000017 2.2e-06 57.4 294 23.5
Peaxi162Scf00268g01428 Petunia axillaris HOM05D000007 ORTHO05D000521 2.2e-06 57.4 262 26.0
COL.COLO4_22733 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.8e-06 57.0 176 25.0
Nn2g13281 Nelumbo nucifera HOM05D000007 ORTHO05D000017 2.8e-06 57.0 152 25.7
Potri.017G058900 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.8e-06 57.0 157 27.4
DCAR_028599 Daucus carota HOM05D000007 ORTHO05D000017 3.7e-06 56.6 189 24.3
PSO017G7120 Papaver somniferum HOM05D000007 ORTHO05D000017 4.8e-06 56.2 269 24.5
Sc21g0000910 Simmondsia chinensis HOM05D000007 ORTHO05D000521 4.8e-06 56.2 249 22.5
CAN.G1106.2 Capsicum annuum HOM05D000007 ORTHO05D000017 6.3e-06 55.8 199 26.1
PSO210G2056 Papaver somniferum HOM05D000007 ORTHO05D000676 6.3e-06 55.8 204 25.0
PSO421G0568 Papaver somniferum HOM05D000007 ORTHO05D000676 6.3e-06 55.8 151 29.8
Peaxi162Scf03085g00002 Petunia axillaris HOM05D000007 ORTHO05D000039 6.3e-06 55.8 279 21.1
PGSC0003DMG400029040 Solanum tuberosum HOM05D000007 ORTHO05D000039 6.3e-06 55.8 252 24.2
DCAR_022308 Daucus carota HOM05D000007 ORTHO05D000521 8.2e-06 55.5 241 24.1
FvH4_6g33751 Fragaria vesca HOM05D000007 ORTHO05D000017 8.2e-06 55.5 133 30.1
Thecc.01G155200 Theobroma cacao HOM05D000007 ORTHO05D000039 8.2e-06 55.5 270 25.9


User provided reference genes

Program Settings