Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 0.0e+00 1449.1 757 100.0
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.3e-305 1052.7 769 71.4
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.1e-299 1031.6 761 70.4
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.7e-297 1025.8 769 69.2
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.9e-296 1022.3 766 70.6
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 4.2e-296 1021.1 760 71.1
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.6e-295 1019.2 761 71.4
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.1e-294 1014.2 756 70.6
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.7e-292 1008.1 756 70.6
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.3e-292 1007.3 773 69.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 6.9e-291 1003.8 749 70.8
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.9e-288 995.7 756 70.0
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.5e-288 995.3 755 69.5
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 6.1e-287 990.7 765 68.6
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 4.8e-284 981.1 766 68.5
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.4e-283 978.8 768 68.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 9.1e-283 976.9 765 68.1
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.8e-281 971.5 765 67.2
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.2e-280 968.4 782 66.0
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.2e-280 968.4 765 67.6
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.8e-278 962.6 765 67.6
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.3e-278 962.2 766 65.9
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 5.2e-278 961.1 765 67.6
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.7e-274 948.7 765 64.7
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 7.2e-272 940.6 765 65.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 7.2e-272 940.6 715 70.1
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.7e-271 938.7 761 66.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 6.1e-271 937.6 771 65.1
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 3.4e-269 931.8 714 69.3
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 9.8e-269 930.2 768 64.2
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 4.8e-268 927.9 763 63.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 8.3e-268 927.2 762 64.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 8.3e-268 927.2 765 64.4
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 9.1e-267 923.7 761 63.9
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.2e-266 923.3 762 65.1
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.0e-266 922.5 766 63.4
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.7e-265 919.5 776 63.3
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.7e-265 919.5 765 61.8
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.9e-265 918.7 789 63.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 3.8e-265 918.3 766 64.2
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 7.2e-264 914.1 807 62.0
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 9.5e-264 913.7 764 64.1
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 2.8e-263 912.1 766 64.1
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 4.7e-263 911.4 766 63.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.8e-262 909.4 764 63.4
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.3e-260 903.3 764 63.2
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.3e-260 903.3 737 66.5
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 3.1e-259 898.7 756 62.4
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 5.4e-259 897.9 764 63.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 5.9e-258 894.4 762 62.1
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 7.8e-258 894.0 787 61.4
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 6.6e-257 891.0 786 61.3
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.1e-256 890.2 767 60.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 5.6e-256 887.9 763 62.3
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 8.0e-255 884.0 738 64.1
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 3.7e-252 875.2 766 61.1
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 2.7e-250 869.0 781 59.7
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.3e-249 866.7 781 59.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 3.0e-249 865.5 764 60.2
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 4.3e-248 861.7 772 60.4
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.0e-246 857.1 761 59.7
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.2e-245 853.6 762 59.2
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 9.8e-245 850.5 765 59.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 9.8e-245 850.5 690 66.5
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.7e-244 848.6 773 58.7
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 4.9e-244 848.2 763 58.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.4e-243 846.7 763 57.8
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 4.1e-243 845.1 761 59.9
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 2.0e-242 842.8 764 59.7
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.0e-241 840.5 775 59.2
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.6e-239 833.2 765 57.6
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.5e-237 826.6 785 56.3
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 5.8e-237 824.7 760 60.4
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 9.9e-237 823.9 760 59.5
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.3e-236 823.5 763 58.2
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-235 819.7 732 60.9
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.7e-234 815.8 731 60.7
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 5.6e-232 808.1 765 56.7
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 3.6e-231 805.4 803 54.8
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 4.1e-227 792.0 576 71.0
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.9e-224 783.1 758 55.3
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.3e-224 782.3 723 59.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 6.4e-220 768.1 563 71.4
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 6.4e-220 768.1 733 60.0
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 6.6e-217 758.1 574 68.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.5e-216 756.1 569 70.1
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.6e-215 753.4 762 53.4
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 5.8e-213 745.0 569 70.3
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 8.7e-209 731.1 734 57.6
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.1e-208 730.7 703 58.5
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.9e-208 729.9 569 68.2
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.4e-206 723.8 755 51.3
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.9e-206 721.5 570 66.1
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.3e-201 706.4 657 56.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.3e-201 706.4 752 50.3
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 2.1e-199 699.9 582 63.7
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 6.9e-198 694.9 767 52.4
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.5e-197 693.7 638 58.3
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 4.5e-197 692.2 516 70.9
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.8e-196 689.1 757 51.5
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 8.4e-196 688.0 573 63.5
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 3.3e-192 676.0 739 51.0
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.6e-181 639.8 524 65.6
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 2.2e-180 636.7 529 63.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.4e-177 627.5 461 70.7
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 9.1e-174 614.8 759 46.4
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 3.8e-164 582.8 507 62.1
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.1e-155 554.7 632 50.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.4e-152 543.1 518 54.8
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 4.1e-150 536.2 776 39.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 8.6e-132 475.3 435 57.5
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 4.1e-126 456.4 333 71.2
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 6.2e-122 442.6 491 52.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 9.2e-118 428.7 534 49.8
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.5e-115 420.6 326 68.4
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 2.4e-113 414.1 291 72.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 8.7e-108 395.6 815 32.3
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 8.7e-108 395.6 285 72.6
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 7.8e-101 372.5 385 54.5
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 3.5e-93 347.1 284 65.1
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 4.6e-93 346.7 477 45.3
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.8e-92 344.7 284 66.5
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.6e-90 338.2 734 30.4
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.7e-85 320.9 225 73.8
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.1e-83 315.5 750 29.3
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 8.4e-79 299.3 345 44.6
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.6e-72 277.7 177 77.4
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 5.3e-65 253.4 204 64.7
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.3e-63 248.8 204 63.7
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.5e-54 218.0 752 25.4
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.2e-53 215.7 187 59.9
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-49 202.6 246 50.8
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 4.2e-46 190.7 141 73.8
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.0e-44 184.1 246 44.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.6e-43 181.4 416 32.9
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.7e-42 178.7 416 32.7
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 9.8e-35 152.9 188 44.7
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 1.5e-30 139.0 108 72.2
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.7e-24 118.2 85 67.1
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.9e-23 114.4 87 66.7
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.3e-22 111.3 291 30.6
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.6e-21 109.0 88 59.1
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.2e-17 93.2 76 61.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.0e-16 92.0 109 48.6
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.6e-15 86.7 243 28.4
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.3e-12 78.6 68 58.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-11 75.9 87 39.1
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 2.1e-08 65.5 149 34.9
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.7e-07 62.4 72 44.4
Nn5g29172 Nelumbo nucifera HOM05D004734 ORTHO05D272015 1.9e-06 58.9 56 53.6
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 2.5e-06 58.5 120 34.2
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 7.3e-06 57.0 35 80.0


User provided reference genes

Program Settings