Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 9.1e-73 276.9 154 100.0
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 3.0e-31 139.0 164 57.9
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 8.6e-31 137.5 168 57.7
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 2.5e-30 136.0 169 54.4
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 4.7e-29 131.7 155 56.1
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 4.0e-28 128.6 159 57.9
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 5.2e-28 128.3 171 53.2
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 2.6e-27 125.9 154 52.6
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.4e-27 125.6 157 54.8
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 3.4e-27 125.6 186 50.0
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 7.6e-27 124.4 176 50.0
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 1.7e-26 123.2 148 56.8
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.7e-26 123.2 157 57.3
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 2.2e-26 122.9 165 50.9
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 4.9e-26 121.7 164 53.7
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 6.4e-26 121.3 131 63.4
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.1e-25 120.6 148 57.4
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.4e-25 120.2 168 50.6
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 4.2e-25 118.6 160 53.1
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.2e-24 117.1 146 52.1
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 7.8e-24 114.4 159 51.6
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 7.8e-24 114.4 154 53.9
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.0e-23 114.0 138 57.2
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 1.3e-23 113.6 106 66.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 2.3e-23 112.8 155 51.0
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 2.3e-23 112.8 156 50.0
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.0e-23 112.5 165 48.5
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 3.9e-23 112.1 164 47.6
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.1e-23 111.7 160 50.0
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 8.7e-23 110.9 155 52.3
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.1e-22 110.5 151 51.7
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.9e-22 109.8 157 50.3
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 4.3e-22 108.6 93 69.9
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.3e-21 107.1 158 48.7
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.6e-21 106.7 140 56.4
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 2.1e-21 106.3 172 48.8
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 2.1e-21 106.3 167 46.7
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 2.8e-21 105.9 166 47.0
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 2.8e-21 105.9 166 47.0
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 3.6e-21 105.5 157 53.5
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.6e-21 105.5 172 48.8
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 4.8e-21 105.1 156 49.4
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 8.1e-21 104.4 187 46.0
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 8.1e-21 104.4 169 46.2
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 1.1e-20 104.0 164 47.0
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 1.1e-20 104.0 164 47.0
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 1.4e-20 103.6 162 45.7
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 1.4e-20 103.6 162 45.7
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 3.1e-20 102.4 164 46.3
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 3.1e-20 102.4 154 51.3
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 3.1e-20 102.4 145 52.4
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.0e-20 102.1 157 48.4
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 5.3e-20 101.7 177 44.6
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 1.2e-19 100.5 158 48.7
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 1.5e-19 100.1 146 46.6
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 1.5e-19 100.1 174 46.6
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 2.0e-19 99.8 166 46.4
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 3.4e-19 99.0 146 45.9
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 3.4e-19 99.0 147 49.0
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 4.4e-19 98.6 164 47.0
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 7.6e-19 97.8 165 47.9
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 7.6e-19 97.8 168 43.5
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 7.6e-19 97.8 168 43.5
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 9.9e-19 97.4 153 45.8
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.3e-18 97.1 164 44.5
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.7e-18 96.7 168 44.0
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 1.7e-18 96.7 152 46.7
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.7e-18 96.7 159 46.5
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 2.2e-18 96.3 161 49.1
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 2.9e-18 95.9 157 43.9
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.9e-18 95.9 154 51.3
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 2.9e-18 95.9 158 46.2
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 3.8e-18 95.5 165 45.5
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 3.8e-18 95.5 165 45.5
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 3.8e-18 95.5 153 50.3
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 4.9e-18 95.1 139 51.1
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 4.9e-18 95.1 150 48.0
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 4.9e-18 95.1 127 52.0
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 8.4e-18 94.4 163 44.8
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.1e-17 94.0 143 49.0
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.9e-17 93.2 148 47.3
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 2.4e-17 92.8 155 48.4
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 2.4e-17 92.8 116 55.2
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 3.2e-17 92.4 165 46.1
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 4.2e-17 92.0 92 57.6
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 5.4e-17 91.7 163 44.8
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 5.4e-17 91.7 79 64.6
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 9.3e-17 90.9 106 53.8
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 1.2e-16 90.5 163 44.2
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.6e-16 90.1 87 62.1
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.1e-16 89.7 140 47.1
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 2.7e-16 89.4 79 63.3
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 2.7e-16 89.4 151 44.4
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 3.5e-16 89.0 118 50.8
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 4.6e-16 88.6 102 57.8
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 6.0e-16 88.2 160 45.6
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 6.0e-16 88.2 99 53.5
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 1.3e-15 87.0 79 63.3
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 2.3e-15 86.3 162 41.4
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 3.0e-15 85.9 163 44.2
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 3.0e-15 85.9 111 51.4
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 3.0e-15 85.9 126 50.0
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 5.1e-15 85.1 134 44.8
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 5.1e-15 85.1 97 56.7
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 5.1e-15 85.1 108 52.8
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 5.1e-15 85.1 166 44.0
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.1e-14 84.0 134 44.0
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.1e-14 84.0 148 46.6
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.1e-14 84.0 98 53.1
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.5e-14 83.6 126 46.8
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 1.5e-14 83.6 176 40.3
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 1.5e-14 83.6 163 43.6
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 1.9e-14 83.2 97 53.6
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.5e-14 82.8 95 55.8
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.3e-14 82.4 125 47.2
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 4.3e-14 82.0 170 42.4
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 5.6e-14 81.6 165 42.4
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 5.6e-14 81.6 96 57.3
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 1.3e-13 80.5 151 45.7
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.3e-13 80.5 96 55.2
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.6e-13 80.1 79 62.0
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.8e-13 79.3 151 43.7
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 3.6e-13 79.0 113 48.7
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 3.6e-13 79.0 148 48.0
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 4.8e-13 78.6 58 72.4
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 4.8e-13 78.6 143 42.7
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 6.2e-13 78.2 156 45.5
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.2e-13 78.2 60 71.7
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.2e-13 78.2 60 71.7
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 6.2e-13 78.2 80 57.5
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 8.1e-13 77.8 134 46.3
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 8.1e-13 77.8 91 62.6
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 8.1e-13 77.8 153 41.8
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 1.4e-12 77.0 151 43.0
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 2.4e-12 76.3 96 54.2
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.4e-12 76.3 91 54.9
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 5.3e-12 75.1 146 44.5
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 5.3e-12 75.1 107 48.6
Zm00001eb414650 Zea mays HOM05D003436 ORTHO05D003674 5.3e-12 75.1 158 43.0
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 1.2e-11 73.9 91 53.8
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-11 73.2 88 56.8
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.6e-11 72.8 100 52.0
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 2.6e-11 72.8 133 42.9
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 3.4e-11 72.4 150 41.3
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 9.9e-11 70.9 83 51.8
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.3e-10 70.5 60 68.3
Os08g0327700 Oryza sativa ssp. japonica HOM05D003436 ORTHO05D003674 1.3e-10 70.5 154 39.0
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 2.2e-10 69.7 72 58.3
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.9e-10 69.3 68 55.9
Atru.chr8.1104 Acer truncatum HOM05D003436 ORTHO05D003674 6.4e-10 68.2 136 44.9
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 6.4e-10 68.2 87 50.6
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 6.4e-10 68.2 63 60.3
ECA247G3621 Erigeron canadensis HOM05D003436 ORTHO05D003674 8.4e-10 67.8 51 70.6
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.1e-09 67.4 107 47.7
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.4e-09 67.0 101 48.5
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 1.9e-09 66.6 116 48.3
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 1.9e-09 66.6 99 49.5
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.4e-09 66.2 82 48.8
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.2e-09 65.9 88 53.4
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.2e-09 65.9 80 51.2
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 3.2e-09 65.9 80 51.2
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.1e-09 64.7 88 53.4
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 1.2e-08 63.9 130 41.5
HanXRQChr02g0048381 Helianthus annuus HOM05D003436 ORTHO05D003674 1.2e-08 63.9 111 47.7
PGR142G2110 Punica granatum HOM05D003436 ORTHO05D003674 1.2e-08 63.9 106 44.3
Actinidia32390 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.7e-08 62.8 105 50.5
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 3.5e-08 62.4 82 47.6
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 4.6e-08 62.0 90 50.0
Zm00001eb308610 Zea mays HOM05D003436 ORTHO05D003674 6.0e-08 61.6 129 42.6
Oeu007767.1 Olea europaea HOM05D003436 ORTHO05D003674 7.9e-08 61.2 95 45.3
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 1.0e-07 60.8 160 38.1
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 1.3e-07 60.5 116 41.4
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 3.0e-07 59.3 92 42.4
TPR.G27779 Trifolium pratense HOM05D003436 ORTHO05D003674 3.9e-07 58.9 127 40.9
CSS0008876 Camellia sinensis var. sinensis HOM05D003436 ORTHO05D003674 1.9e-06 56.6 122 36.9
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 1.9e-06 56.6 147 37.4
Ah.13g075920 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.5e-06 56.2 87 44.8
Phvul.007G259400 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.3e-06 55.8 137 38.7


User provided reference genes

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