Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 5.9e-91 337.8 207 100.0
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 4.8e-85 318.2 207 97.1
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 1.2e-48 197.2 119 85.7
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 2.9e-42 176.0 255 59.6
CANSAT01G0035 Cannabis sativa HOM05D007592 ORTHO05D004645 3.4e-30 136.0 151 77.5
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 2.3e-26 123.2 112 62.5
CANSAT54G1431 Cannabis sativa HOM05D007592 ORTHO05D004645 8.6e-26 121.3 193 61.7
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.1e-25 120.9 98 67.3
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 1.1e-25 120.9 112 61.6
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.5e-25 120.6 98 67.3
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 1.6e-24 117.1 112 59.8
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.2e-22 110.9 100 59.0
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 9.9e-22 107.8 100 59.0
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.9e-21 106.3 106 53.8
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 2.9e-21 106.3 100 59.0
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 5.4e-20 102.1 100 57.0
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 7.1e-20 101.7 211 34.6
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.3e-18 96.7 70 64.3
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 3.0e-18 96.3 100 55.0
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 3.9e-18 95.9 88 56.8
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 1.5e-17 94.0 101 54.5
BraA06t26442Z Brassica rapa HOM05D007592 ORTHO05D004645 3.3e-17 92.8 84 59.5
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 5.2e-15 85.5 106 45.3
CANSAT11G0484 Cannabis sativa HOM05D007743 ORTHO05D004645 6.8e-15 85.1 106 51.9
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-14 84.3 103 45.6
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 2.6e-14 83.2 99 50.5
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.6e-14 83.2 100 49.0
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 3.4e-14 82.8 80 52.5
BolC1t03512H Brassica oleracea HOM05D007592 ORTHO05D014827 3.4e-14 82.8 207 32.9
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 9.9e-14 81.3 101 50.5
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 8.4e-13 78.2 100 45.0
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 8.4e-13 78.2 66 53.0
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 8.4e-13 78.2 66 53.0
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 8.4e-13 78.2 69 50.7
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-12 77.8 66 51.5
AL1G54420 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 3.2e-12 76.3 100 44.0
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.2e-12 76.3 108 42.6
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 3.2e-12 76.3 66 51.5
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 4.2e-12 75.9 68 51.5
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 9.2e-12 74.7 68 50.0
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 1.2e-11 74.3 59 55.9
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 3.5e-11 72.8 66 48.5
Oeu019651.1 Olea europaea HOM05D007592 ORTHO05D004645 3.5e-11 72.8 149 31.5
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 6.0e-11 72.0 74 47.3
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 7.8e-11 71.6 66 48.5
CARHR184030 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.3e-10 70.9 106 44.3
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 2.3e-10 70.1 68 45.6
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 3.0e-10 69.7 130 39.2
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.0e-10 69.7 104 40.4
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 3.0e-10 69.7 104 39.4
AL5G14150 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.5e-09 67.4 61 50.8
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 1.5e-09 67.4 65 46.2
Atru.chr3.1639 Acer truncatum HOM05D007592 ORTHO05D004645 2.5e-09 66.6 70 51.4
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 7.3e-09 65.1 50 64.0
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 7.3e-09 65.1 137 32.8
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 1.6e-08 63.9 220 30.0
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 2.1e-08 63.5 98 39.8
CARHR180790 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.1e-08 63.5 107 38.3
AL1G39540 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.8e-08 63.2 61 45.9
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.1e-08 61.6 127 33.1
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.1e-07 61.2 110 33.6
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-07 60.8 127 33.1
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-07 60.8 127 33.1
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-07 60.8 127 33.1
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-07 60.8 127 33.1
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.4e-07 60.8 127 33.1
Rhsim01G0124200 Rhododendron simsii HOM05D000422 ORTHO05D004645 1.4e-07 60.8 70 44.3
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 1.8e-07 60.5 98 34.7
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-07 60.5 133 33.1
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 3.1e-07 59.7 133 33.1
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 4.0e-07 59.3 89 37.1
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 5.3e-07 58.9 43 67.4
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.3e-07 58.9 127 32.3
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 9.0e-07 58.2 67 49.3
CSS0006860 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.5e-06 57.4 57 49.1
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 1.5e-06 57.4 133 32.3
FAN04G2392 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-06 57.4 119 32.8
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 2.0e-06 57.0 100 42.0
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 2.0e-06 57.0 79 43.0
Atru.chr10.191 Acer truncatum HOM05D007592 ORTHO05D004645 2.6e-06 56.6 67 50.7
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.6e-06 56.6 90 42.2
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.6e-06 56.6 90 42.2
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.6e-06 56.6 90 42.2
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.6e-06 56.6 90 42.2
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.6e-06 56.6 90 42.2
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 2.6e-06 56.6 126 31.0
CSS0033894 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.4e-06 56.2 90 45.6
CSS0034959 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.4e-06 56.2 90 44.4
CSS0041981 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.4e-06 56.2 90 45.6
Atru.chr4.1791 Acer truncatum HOM05D007592 ORTHO05D004645 4.4e-06 55.8 66 51.5
CSS0001664 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.4e-06 55.8 90 42.2
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.4e-06 55.8 90 42.2
CSS0002566 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.5 97 42.3
CSS0010296 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.5 97 42.3
CSS0010386 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.5 97 42.3
CSS0012194 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.8e-06 55.5 97 42.3


User provided reference genes

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