Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.6e-100 369.4 178 100.0
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.2e-73 280.0 153 85.6
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 3.6e-73 278.5 166 79.5
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.8e-72 276.2 171 77.2
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 2.3e-72 275.8 168 79.8
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 6.8e-72 274.2 166 77.1
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 6.8e-72 274.2 162 79.6
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 1.2e-71 273.5 175 76.0
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.5e-71 273.1 159 81.1
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 3.4e-71 271.9 159 79.9
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 9.9e-71 270.4 164 75.0
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 9.9e-71 270.4 164 78.7
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.3e-70 270.0 170 73.5
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.7e-70 269.6 161 76.4
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 1.7e-70 269.6 161 78.9
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.2e-70 269.2 162 75.9
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 4.9e-70 268.1 164 75.0
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 4.9e-70 268.1 171 74.3
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 6.4e-70 267.7 169 72.8
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.1e-69 266.9 169 73.4
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.1e-69 266.9 153 79.1
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.4e-69 265.8 168 72.6
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.4e-69 265.8 168 72.6
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 2.4e-69 265.8 170 72.9
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 3.2e-69 265.4 174 70.1
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 3.2e-69 265.4 173 73.4
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 4.1e-69 265.0 161 74.5
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 4.1e-69 265.0 173 73.4
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.4e-69 264.6 172 73.8
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 7.1e-69 264.2 164 74.4
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 9.2e-69 263.8 161 74.5
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 2.1e-68 262.7 168 73.2
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 2.1e-68 262.7 168 73.2
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 2.1e-68 262.7 169 72.8
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 2.1e-68 262.7 164 74.4
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 2.7e-68 262.3 159 77.4
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.7e-68 262.3 159 77.4
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 2.7e-68 262.3 174 72.4
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.7e-68 262.3 167 74.9
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 3.5e-68 261.9 168 71.4
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 6.0e-68 261.2 151 80.1
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 6.0e-68 261.2 162 73.5
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 7.8e-68 260.8 151 80.1
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.0e-67 260.4 159 78.6
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 1.7e-67 259.6 175 72.6
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 2.3e-67 259.2 170 71.2
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 3.9e-67 258.5 168 72.6
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 5.1e-67 258.1 162 72.8
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 6.6e-67 257.7 159 76.1
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 8.6e-67 257.3 169 71.6
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 8.6e-67 257.3 169 71.0
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.1e-66 256.9 167 70.1
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 1.5e-66 256.5 169 72.8
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.9e-66 256.1 162 71.6
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 2.5e-66 255.8 151 78.1
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 2.5e-66 255.8 156 76.3
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 3.3e-66 255.4 156 76.9
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.3e-66 255.0 171 68.4
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 4.3e-66 255.0 161 76.4
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 5.6e-66 254.6 159 74.8
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 5.6e-66 254.6 160 71.2
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 7.3e-66 254.2 165 70.9
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 7.3e-66 254.2 151 78.1
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 9.6e-66 253.8 155 75.5
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.8e-65 252.3 169 68.6
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 6.2e-65 251.1 161 73.3
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 8.1e-65 250.8 165 73.3
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 8.1e-65 250.8 166 68.7
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 1.1e-64 250.4 176 68.2
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 1.4e-64 250.0 162 71.0
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 5.2e-64 248.1 177 65.5
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 9.0e-64 247.3 201 62.2
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.5e-63 246.5 150 74.7
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 3.4e-63 245.4 150 76.7
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 5.8e-63 244.6 155 72.3
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 9.9e-63 243.8 166 66.3
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 9.9e-63 243.8 154 74.7
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.3e-62 243.4 160 66.9
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.3e-62 243.4 161 72.0
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 2.9e-62 242.3 140 77.9
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 4.9e-62 241.5 162 67.3
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.9e-61 239.6 158 70.9
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 1.9e-61 239.6 166 70.5
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 1.9e-61 239.6 157 68.8
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 7.1e-61 237.7 170 64.7
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.3e-59 232.6 159 68.6
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.2e-55 220.3 167 66.5
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 7.6e-55 217.6 197 60.9
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 5.1e-51 204.9 155 58.7
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 6.7e-51 204.5 126 77.8
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 5.6e-50 201.4 126 73.0
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 1.1e-48 197.2 132 69.7
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 5.8e-47 191.4 162 59.3
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 7.6e-47 191.0 124 70.2
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 9.9e-47 190.7 132 66.7
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.1e-45 187.2 149 55.7
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.4e-45 186.8 176 52.8
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 1.1e-42 177.2 152 59.2
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.9e-42 176.4 152 54.6
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.0e-38 164.1 160 55.0
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 8.4e-38 161.0 158 55.1
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 5.1e-35 151.8 99 67.7
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 6.3e-33 144.8 100 73.0
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-30 137.1 93 64.5
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 1.4e-29 133.7 114 59.6
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.5e-29 132.9 76 77.6
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.2e-22 109.8 72 70.8
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 4.2e-13 79.0 50 72.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 4.7e-12 75.5 46 71.7
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 5.2e-11 72.0 43 76.7
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 8.8e-11 71.2 77 48.1
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 1.1e-10 70.9 36 80.6
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 4.8e-09 65.5 43 72.1
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 8.2e-09 64.7 43 67.4
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 2.9e-06 56.2 47 57.4


User provided reference genes

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