Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.0e-107 392.5 209 100.0
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 2.7e-91 339.0 176 84.7
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 3.6e-88 328.6 176 82.4
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.0e-87 325.5 176 81.8
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 8.8e-87 323.9 176 81.2
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 8.8e-87 323.9 176 81.2
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 8.8e-87 323.9 176 83.0
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.2e-86 323.6 176 81.2
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-86 322.4 176 81.8
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.7e-86 321.2 176 79.0
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 9.8e-86 320.5 176 79.0
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.3e-85 320.1 192 78.6
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-85 320.1 176 81.2
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.7e-85 319.7 176 80.1
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.7e-85 319.7 176 82.4
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.2e-85 319.3 177 80.2
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.2e-85 319.3 177 80.2
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.2e-85 319.3 176 80.1
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 2.2e-85 319.3 176 80.1
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 3.7e-85 318.5 176 80.7
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 3.7e-85 318.5 176 79.5
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 3.7e-85 318.5 176 79.5
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 4.8e-85 318.2 176 79.5
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.8e-85 318.2 175 81.1
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 4.8e-85 318.2 176 82.4
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 6.3e-85 317.8 176 80.1
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 6.3e-85 317.8 176 80.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.3e-85 317.4 176 80.7
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-84 317.0 176 80.7
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.4e-84 314.7 176 80.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 9.1e-84 313.9 176 80.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.2e-83 313.5 176 79.5
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.6e-83 313.2 193 75.6
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.6e-83 313.2 172 80.8
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.0e-83 312.8 171 81.3
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 3.5e-83 312.0 177 78.0
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 4.5e-83 311.6 176 78.4
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 5.9e-83 311.2 176 79.0
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 5.9e-83 311.2 173 79.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 5.9e-83 311.2 179 76.5
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.0e-82 310.5 176 76.7
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.7e-82 309.7 175 77.7
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.3e-82 309.3 176 77.3
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.9e-81 306.2 173 78.6
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 4.2e-81 305.1 176 77.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 4.2e-81 305.1 175 76.6
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 4.2e-81 305.1 179 78.2
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 7.2e-81 304.3 174 77.0
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 7.2e-81 304.3 176 75.0
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 9.5e-81 303.9 172 78.5
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 9.5e-81 303.9 172 78.5
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 9.5e-81 303.9 176 76.1
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.5e-81 303.9 176 76.7
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.6e-80 303.1 169 78.1
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 2.1e-80 302.8 176 75.6
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 2.1e-80 302.8 176 75.6
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.8e-80 302.4 176 75.0
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.6e-80 302.0 177 76.3
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 6.1e-80 301.2 174 75.3
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 6.1e-80 301.2 169 76.9
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 8.0e-80 300.8 176 74.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 8.0e-80 300.8 177 79.7
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 8.0e-80 300.8 199 69.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 3.0e-79 298.9 172 73.8
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 4.0e-79 298.5 172 76.2
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.2e-79 298.1 176 73.9
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 6.8e-79 297.7 176 75.6
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 6.8e-79 297.7 174 73.6
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 8.9e-79 297.4 176 73.9
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.2e-78 297.0 172 75.6
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.5e-78 296.6 176 75.0
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.5e-78 296.6 176 75.0
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.0e-78 296.2 172 75.6
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-78 296.2 172 75.6
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 3.4e-78 295.4 172 75.6
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.4e-78 295.0 169 76.3
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 4.4e-78 295.0 174 74.1
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 4.4e-78 295.0 168 76.8
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 5.7e-78 294.7 172 75.0
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 7.5e-78 294.3 172 74.4
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 7.5e-78 294.3 176 73.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.3e-77 293.5 176 72.2
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-77 293.5 169 75.7
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.3e-77 293.5 169 75.7
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 2.8e-77 292.4 172 74.4
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 3.7e-77 292.0 169 75.1
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 3.7e-77 292.0 172 73.8
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.3e-77 291.2 208 65.4
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 8.3e-77 290.8 158 83.5
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.4e-76 290.0 172 75.0
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.4e-76 289.3 170 76.5
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 5.4e-76 288.1 154 80.5
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.2e-75 287.0 197 66.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.6e-74 280.8 155 80.6
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-73 279.6 218 60.1
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-73 279.6 218 60.1
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.9e-73 279.6 154 80.5
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.8e-71 273.1 191 67.0
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 8.9e-71 270.8 151 77.5
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.5e-70 270.0 157 74.5
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.0e-70 269.6 173 70.5
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 2.6e-70 269.2 157 73.9
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 7.5e-70 267.7 171 70.8
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 4.9e-69 265.0 176 65.9
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 6.4e-69 264.6 156 76.9
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 9.2e-68 260.8 169 68.6
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 9.2e-68 260.8 169 68.6
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.7e-67 259.2 273 51.3
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 4.6e-67 258.5 173 65.9
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.0e-66 257.3 152 75.0
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 8.6e-66 254.2 155 71.0
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 9.5e-65 250.8 176 63.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.6e-64 250.0 177 66.7
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.6e-64 248.8 186 64.0
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.3e-63 246.1 177 67.2
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.4e-62 242.3 199 56.8
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.2e-59 233.8 139 70.5
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 1.0e-58 230.7 175 58.9
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 4.3e-57 225.3 131 71.8
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 5.8e-54 214.9 187 59.4
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.3e-53 213.8 177 52.0
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.4e-52 210.3 176 60.2
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 7.1e-52 208.0 176 55.7
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-51 206.5 111 80.2
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 4.6e-51 205.3 170 55.9
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 3.8e-45 185.7 195 49.7
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.2e-43 180.6 196 44.9
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.1e-42 175.3 165 43.6
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 5.1e-42 175.3 165 43.6
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.6e-42 174.9 188 52.7
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 8.7e-42 174.5 85 87.1
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.6e-38 162.9 113 61.9
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 3.4e-38 162.5 199 39.2
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.4e-38 162.5 138 56.5
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.4e-37 158.3 81 82.7
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.4e-36 156.4 171 40.4
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.6e-35 153.7 172 40.1
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 8.7e-34 147.9 154 45.5
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.9e-33 146.7 93 68.8
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.5e-33 146.4 142 44.4
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.3e-33 145.6 140 53.6
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.0e-26 124.4 93 60.2
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.1e-12 77.8 74 54.1
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 3.2e-12 76.3 46 67.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.8e-08 63.2 43 67.4
Medtr4g125350 Medicago truncatula HOM05D001119 ORTHO05D000862 2.6e-06 56.6 36 77.8


User provided reference genes

Program Settings