Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1451.0 753 100.0
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1432.2 750 99.1
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1265.8 757 86.3
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1264.6 757 86.1
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1255.7 757 85.9
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1248.8 753 86.1
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1244.2 759 85.1
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1242.3 758 84.7
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1238.4 753 84.5
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1236.5 758 84.3
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1235.7 762 84.0
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1233.4 765 84.3
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1233.0 755 83.8
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1231.9 753 83.9
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1231.5 765 84.1
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1229.2 753 84.3
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1228.8 731 85.9
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1228.0 728 86.7
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1227.6 762 83.2
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1223.8 751 84.7
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1219.1 735 84.8
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1215.7 751 83.8
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1215.7 748 84.0
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1213.4 753 83.0
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1210.3 730 85.1
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1210.3 730 85.1
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1208.7 733 83.2
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1208.7 733 83.2
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1208.7 730 84.9
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1208.4 730 84.9
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1207.2 730 84.9
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1207.2 730 84.9
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1206.4 729 85.5
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1206.0 730 84.8
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1204.9 757 81.5
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1204.5 729 83.1
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1203.7 730 84.5
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1203.0 731 82.9
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1203.0 731 82.9
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1201.4 758 82.6
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1199.5 753 82.3
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1199.1 758 82.6
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1198.3 728 83.0
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1197.2 756 82.0
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1195.3 729 83.3
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1194.9 753 81.8
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1193.7 729 83.1
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1192.6 748 81.3
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1192.2 733 82.1
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1191.4 730 82.5
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1189.9 732 83.2
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1189.9 761 81.5
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1187.2 759 81.7
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1186.0 754 81.3
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1183.7 749 82.2
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1182.9 742 82.9
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1182.5 731 83.3
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1181.4 731 81.7
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1180.6 758 81.3
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 733 81.7
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 729 83.3
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 756 81.0
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1179.5 726 84.0
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1179.5 753 81.0
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1179.1 754 79.3
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1178.3 756 80.6
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1174.5 758 80.9
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1173.7 756 80.7
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1167.1 730 83.6
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1166.8 706 82.9
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1162.5 735 81.1
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1159.1 730 82.3
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1157.9 731 81.4
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1151.7 735 80.4
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1146.0 735 80.8
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1143.6 733 80.1
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1142.1 755 78.3
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1140.2 755 78.1
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1139.8 755 78.3
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1136.7 731 80.0
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1136.3 731 80.0
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1135.6 731 80.0
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 731 79.8
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1130.9 730 80.3
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1130.2 730 79.3
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1130.2 731 79.6
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1129.4 732 78.7
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1129.4 730 79.5
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1120.5 710 81.1
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1115.1 736 77.9
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1113.6 754 77.3
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1113.6 754 77.3
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1110.5 729 77.9
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 0.0e+00 1109.0 727 76.2
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 0.0e+00 1089.3 698 80.5
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 0.0e+00 1085.5 751 75.1
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 0.0e+00 1081.2 754 72.8
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 1.5e-311 1072.4 728 76.0
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 2.6e-311 1071.6 752 72.5
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 1.5e-309 1065.8 727 74.1
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.8e-308 1061.6 758 70.8
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.6e-306 1055.0 725 74.9
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 4.5e-306 1054.3 746 70.9
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 2.5e-301 1038.5 720 75.7
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 2.5e-301 1038.5 750 73.5
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 2.1e-295 1018.8 769 68.9
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 1.1e-291 1006.5 731 72.9
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 7.6e-290 1000.3 699 73.8
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 2.9e-289 998.4 664 76.4
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 7.9e-287 990.3 728 70.5
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 4.8e-284 981.1 662 75.1
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 3.1e-275 951.8 753 68.8
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 3.1e-259 898.7 729 61.9
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 2.5e-256 889.0 737 61.9
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 3.0e-254 882.1 738 65.3
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 5.7e-253 877.9 729 69.0
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 3.5e-250 868.6 731 60.7
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.5e-248 863.2 561 79.0
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 3.3e-240 835.5 518 84.2
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.2e-237 827.0 643 67.5
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 4.9e-220 768.5 434 91.5
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 1.2e-215 753.8 868 48.5
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 5.2e-214 748.4 550 71.8
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 8.7e-193 677.9 386 90.2
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 2.5e-184 649.8 412 79.6
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 5.9e-173 612.1 330 94.5
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 6.1e-170 602.1 391 78.5
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 6.9e-166 588.6 533 57.2
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 6.5e-164 582.0 761 47.3
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.1e-162 577.0 529 58.8
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.9e-156 556.6 727 46.4
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 3.0e-153 546.6 531 56.9
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.6e-146 524.2 357 75.9
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 9.1e-142 508.4 495 56.4
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 3.0e-137 493.4 328 78.7
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.3e-132 478.0 741 37.8
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 6.8e-129 465.7 834 34.4
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 8.8e-129 465.3 307 78.5
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 4.9e-119 433.0 499 52.9
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 1.8e-118 431.0 275 80.0
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 1.7e-116 424.5 271 80.8
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 6.6e-116 422.5 271 80.4
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 2.2e-111 407.5 315 68.9
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 7.3e-107 392.5 274 74.1
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 8.1e-106 389.0 210 91.9
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 1.9e-102 377.9 235 81.3
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 6.0e-101 372.9 232 81.5
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 6.0e-101 372.9 232 81.5
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.3e-100 371.7 420 53.6
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 2.7e-93 347.4 211 83.9
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.5e-88 331.6 184 89.1
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 2.9e-87 327.4 190 85.8
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 1.6e-53 215.3 150 71.3
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 1.1e-51 209.1 123 83.7
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 9.7e-51 206.1 149 71.1
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 1.7e-50 205.3 187 59.4
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 1.4e-49 202.2 214 54.7
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 2.4e-49 201.4 120 87.5
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 7.2e-46 189.9 130 73.1
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 1.7e-39 168.7 115 71.3
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 1.4e-33 149.1 143 63.6
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 7.7e-32 143.3 773 21.6
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.0e-31 142.9 96 76.0
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.7e-29 134.8 78 89.7
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 1.0e-23 116.3 262 40.1
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 4.2e-22 110.9 71 76.1
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 1.2e-21 109.4 79 77.2
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 1.6e-21 109.0 92 65.2
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 2.3e-20 105.1 81 71.6
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 2.3e-20 105.1 81 71.6
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 2.6e-19 101.7 89 62.9
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 6.3e-18 97.1 88 60.2
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 3.3e-14 84.7 59 74.6
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 4.2e-14 84.3 57 75.4
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 9.5e-14 83.2 54 74.1
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 2.8e-10 71.6 55 65.5
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 2.8e-10 71.6 55 65.5
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 2.8e-10 71.6 55 65.5
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 8.3e-10 70.1 55 63.6
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 1.9e-06 58.9 46 67.4
TPR.G34125 Trifolium pratense HOM05D002391 ORTHO05D004870 9.5e-06 56.6 43 65.1


User provided reference genes

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