Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 5010.7 2547 100.0
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 4722.1 2553 94.6
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3909.8 2555 79.0
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3817.3 2560 77.2
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3776.5 2579 76.4
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3770.3 2553 76.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3752.6 2580 75.7
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3739.5 2551 75.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3738.7 2551 75.5
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3735.3 2555 75.4
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3722.6 2555 75.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3712.9 2550 74.5
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3700.2 2556 74.8
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3695.2 2562 74.2
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3683.3 2556 74.1
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3661.7 2563 73.9
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3647.8 2550 73.7
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3615.1 2550 73.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3607.4 2595 71.8
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3570.0 2555 72.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3556.1 2557 72.1
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3553.5 2610 71.4
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3542.7 2551 71.9
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3525.7 2553 71.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3514.5 2568 70.9
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3513.8 2552 71.0
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3508.8 2554 70.9
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3500.3 2548 70.6
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3481.8 2554 70.6
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3477.6 2550 70.0
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3474.1 2550 70.2
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3459.5 2547 69.8
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3441.4 2555 69.7
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3412.9 2553 69.3
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3409.0 2558 69.7
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3401.7 2554 68.6
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3368.2 2556 68.5
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3327.0 2572 67.5
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3320.8 2877 62.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3289.2 2560 66.4
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3268.8 2577 66.4
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3259.2 2579 66.2
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3248.8 2239 74.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3226.0 2558 66.1
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3221.4 2553 66.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3211.0 2563 65.4
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3207.2 2557 65.6
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3200.2 2557 65.4
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3197.1 2558 65.1
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3185.6 2558 65.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3184.8 2599 65.8
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3166.7 2347 70.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3161.3 2561 64.9
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3157.5 2556 64.4
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3141.7 2571 65.1
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3132.0 2551 64.2
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3125.5 2552 64.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3115.9 2583 63.5
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3106.2 2549 63.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3106.2 2583 63.4
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3096.2 2087 75.9
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3078.9 2428 66.8
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3061.2 2562 63.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3052.7 2580 62.8
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3046.9 2559 62.7
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3030.4 2563 62.5
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2951.4 2236 68.2
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2927.5 1888 79.3
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2912.5 2631 60.6
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2845.8 2038 72.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2799.6 1873 76.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2631.3 1735 77.6
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2603.9 1644 80.6
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2533.4 1847 71.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2325.8 2326 54.9
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2324.7 1748 69.0
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2211.8 1777 66.5
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2194.9 1725 67.2
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2103.2 2696 46.4
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2078.9 2777 44.7
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2053.1 1696 64.2
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1742.6 1188 74.6
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1723.4 1178 75.6
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1686.4 1099 79.4
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1686.0 1419 63.8
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1677.9 1146 75.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1677.1 2575 41.1
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1562.0 1152 71.6
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1560.0 1143 71.6
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1480.7 2793 37.1
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1474.9 1511 54.2
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1466.1 2664 37.0
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1424.8 854 84.8
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1424.1 1187 63.6
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1405.2 1648 49.1
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1338.6 1174 62.4
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1317.8 1501 50.0
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1241.1 745 84.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1230.7 901 69.0
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.0e-299 1031.9 672 78.3
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 7.3e-292 1008.8 609 84.4
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.3e-288 998.0 1140 49.3
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-286 991.5 923 59.3
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.9e-274 948.7 1042 51.2
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 6.2e-267 926.0 624 76.6
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 6.6e-261 906.0 1049 50.3
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 7.4e-236 822.8 746 60.9
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.9e-228 798.1 917 48.7
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-202 712.6 496 73.4
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.2e-196 692.6 680 54.6
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.0e-196 691.8 843 50.3
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.4e-194 685.6 875 45.0
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 3.1e-186 657.9 679 52.1
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.7e-179 634.4 680 50.0
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.7e-176 625.5 613 59.5
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.2e-173 614.0 386 79.0
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.8e-173 613.6 487 63.7
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 2.8e-166 591.7 490 62.7
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.0e-145 520.8 550 53.8
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 2.3e-144 518.8 502 57.0
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 8.4e-123 447.2 486 49.4
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 4.5e-116 424.9 520 45.4
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 4.3e-111 408.3 265 76.2
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.4e-109 402.5 239 86.2
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-91 341.7 181 91.7
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.2e-89 337.0 347 51.3
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.0e-87 329.7 204 82.8
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 5.0e-83 315.1 181 84.0
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.6e-81 310.1 219 71.2
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.0e-80 305.8 229 68.1
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 4.0e-80 305.4 322 54.0
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 2.0e-79 303.1 205 74.6
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.9e-75 289.3 152 95.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 4.4e-71 275.4 158 81.6
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.5e-66 259.6 253 56.1
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 4.9e-54 218.8 1965 22.8
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.2e-52 214.2 319 42.9
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.3e-51 209.9 338 39.6
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 4.3e-50 205.7 319 41.4
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.2e-49 204.1 320 41.9
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 2.9e-46 193.0 255 41.6
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 4.6e-44 185.7 319 38.6
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.3e-38 167.5 116 74.1
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.1e-37 164.5 105 76.2
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.0e-35 157.9 116 74.1
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.4e-32 146.7 143 53.8
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.7e-30 140.6 150 46.7
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.6e-28 134.0 100 77.0
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.6e-28 134.0 100 77.0
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 7.8e-28 131.7 100 68.0
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 1.2e-23 117.9 121 56.2
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.1e-21 111.3 142 45.8
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 5.4e-21 109.0 120 45.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 2.5e-18 100.1 183 38.8
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 5.6e-18 99.0 131 49.6
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 4.8e-17 95.9 88 54.5
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.8e-16 94.0 75 64.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 9.0e-16 91.7 66 69.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 9.0e-16 91.7 66 69.7
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 5.8e-15 89.0 61 75.4
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 5.8e-15 89.0 47 91.5
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 4.9e-14 85.9 204 32.4
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.4e-14 85.5 123 49.6
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 8.4e-14 85.1 92 51.1
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 1.4e-13 84.3 82 53.7
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.2e-13 83.2 75 62.7
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 4.2e-13 82.8 76 57.9
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.0e-11 78.2 51 80.4
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 1.3e-11 77.8 58 63.8
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 5.1e-11 75.9 58 65.5
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.7e-11 75.5 66 66.7
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 5.6e-10 72.4 61 62.3
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 9.6e-10 71.6 48 77.1
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 3.1e-08 66.6 104 42.3
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 4.0e-08 66.2 82 47.6


User provided reference genes

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